Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq13324 125 7e-24 seq15263 118 1e-21 seq2613 102 8e-17 seq18532 96.9 3e-15 >seq13324 Length=6237 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| ||||| | ||||||||||| || ||||||||||| Sbjct 6129 CCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 6070 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||||||||| |||||||| || |||||| |||||||||||| || || Sbjct 6069 AGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGA 6010 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| | | || ||| | | || | || |||| | ||| | Sbjct 6009 ATACCTTCCTTGTC-TTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCAC 5951 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || || || || ||||| || ||||||||||| Sbjct 5950 ATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq15263 Length=38747 Score = 118 bits (130), Expect = 1e-21 Identities = 698/1098 (64%), Gaps = 30/1098 (3%) Strand=Plus/Plus Query 145069 AAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTC 145128 ||||||||||||||| || || || |||| || ||||| | ||||||| || || Sbjct 34009 AAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGACGTATACGGTTCAATCGATTC 34068 Query 145129 GTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATT 145188 || ||||| || || || || |||| || || |||||| |||||| | || || || Sbjct 34069 ATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATGGGCGCCACGAGCAACGAGTT 34128 Query 145189 GCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCA-TAGC--GAAGT 145245 ||| | |||| ||| | | | |||||| | || ||||||||| ||| || | Sbjct 34129 GCGAATCCCGTACTTGATCACCTGTTCCTTCAATGTGTTCCAATCCCACAAGCCTGAGGA 34188 Query 145246 CGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAA 145305 ||| ||||| |||||| || |||| || || || | || || ||| |||| ||| Sbjct 34189 CGGTGTCACGCCCCACAAATCAAACTGGAAGATCCCTTTACTCGCAGGGGAGCCTGCAAA 34248 Query 145306 GGAACTGTAACTGCCCCAAGT-TTTGGCGAGCTCGCAAC-TCGCCTCCAGAGCGCCGAAA 145363 | || || | |||| | |||||| | ||| || | || ||||| || | ||| Sbjct 34249 CG-TCTCGTACGGTCCCAGTTCTTTGGCAATCTC-CATCGACGTCTCCATGGCAGCAAAA 34306 Query 145364 TAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATG 145423 || || || || || | | |||| | | |||||| |||||||| | || Sbjct 34307 TAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATGGATAA 34366 Query 145424 CGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTC 145483 || || | ||| |||||||| || ||||| | || | || || || ||||| | Sbjct 34367 TTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGATGCCGC 34426 Query 145484 ATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAG 145543 || ||| | | | || || | || || ||| || || | || || | | Sbjct 34427 ATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTGTTTAGG 34486 Query 145544 TTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCA 145603 |||||| || || || || | || ||| |||| ||| | ||| || || Sbjct 34487 TTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTTGAAAATTGAAC---GCACGGT-- 34541 Query 145604 ACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGC 145662 || ||||| | | | || | ||| || | ||||| || ||| || || ||| Sbjct 34542 -CGTCCACAAATTTCGGTAACGCCACCGATGCGAGGTTACACACGGCCACTTCATCGGGC 34600 Query 145663 GTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTG 145722 | || |||| | | | || |||||| || || || || || || ||||| || Sbjct 34601 GACG-TGTACTCAATCACTTCACAGCACAAGTTACTCGATCGAATCGTGCCGAGATTCTG 34659 Query 145723 CTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCAC 145782 ||||| || | || |||||||||||| |||||| |||| |||| ||||| | Sbjct 34660 TTGATTCGACTTGCGATTCGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAAT 34719 Query 145783 CTGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTAGCGG 145840 ||| | |||| ||| |||| ||| | || || || || | | ||| Sbjct 34720 CTGGGCGTCCAAGATGGCAAAC--CACAATTGTTGGGCTTTCATGGTCTTCCGCGCGCGT 34777 Query 145841 CCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGG 145900 || || | |||||| | ||| | | |||||| ||| || |||| ||| ||| Sbjct 34778 CCATCGTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCGCCCCAGCATTCGTACAAA 34837 Query 145901 CCGGGACACTT-GTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCAT 145959 ||||| | ||| ||| ||||| | | ||| | || ||||| | ||||||| ||| Sbjct 34838 CCGGG-CGCTTCGTTCGGACAGAATAAACTCCACTCTCCATTGGCTTCTACGCGCTTCAT 34896 Query 145960 AAACAAATCTGGCACCCACAGCGCGTACATCAAGT--CGCGCGCTTTGCAATCCTCAGCA 146017 ||||||||| || | ||||| || || | ||| | || || | || || ||| Sbjct 34897 AAACAAATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCGATGTAA--CTCGTTG 34954 Query 146018 CCCATGTTTCGCTTCAAATTAAGCACACTATAG-ATGTCCGCGTGCCACGGTTCAATATA 146076 || |||| | || | | | ||| || | ||| || |||||||| || | || Sbjct 34955 CCGTGGTTTTTCCGTAAGTCCA-AAAACTCGAGCACGTCGGCATGCCACGGCTCCAAGTA 35013 Query 146077 GACGGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTT 146133 || ||| | | ||||| ||||| ||| || || ||||| | ||| || | | || Sbjct 35014 GATGGCAAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTATCATT 35073 Query 146134 AAAGACGCGCACCATGGG 146151 ||||||||||| |||||| Sbjct 35074 AAAGACGCGCAACATGGG 35091 >seq2613 Length=31273 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| || |||| ||||||||||||||||||||||| || Sbjct 12302 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGAATGTTGTAGTCCGCG 12243 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | | || |||||| ||||||||||| || |||| | |||||||||||| ||||| Sbjct 12242 AGAGAACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 12183 Query 131128 ATTCCT 131133 |||||| Sbjct 12182 ATTCCT 12177 >seq18532 Length=6745 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| |||||||| ||| || ||||| ||||| ||||||||||| || ||| Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 ||| |||||||||||| || ||||||||||| ||||| ||||| ||| | | | Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGT 5271 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| | ||| | || | || | ||| || || || | || || || | Sbjct 5272 CAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5331 Query 131225 AAATCTGCATG 131235 | ||||||||| Sbjct 5332 ATATCTGCATG 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471854758314240