Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15263 188 9e-43 >seq15263 Length=38747 Score = 188 bits (208), Expect = 9e-43 Identities = 729/1128 (65%), Gaps = 18/1128 (2%) Strand=Plus/Plus Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 |||| |||||||| ||||||||||| || | || ||||||| ||| |||||||||| Sbjct 34305 AATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCTTCGTCGCTCTCAAATGGAT 34364 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 |||| | ||| |||||||| || || | || || || || || || || || | ||| | Sbjct 34365 AATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCGATCCCAATCGGACGATGCC 34424 Query 62610 TCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 62669 | |||| || | ||||| | || |||||||| | ||| || | || || | Sbjct 34425 GCATATTGGACGTACGTGCTTCCTTTACGGGGTAATAATTGACATCAATCACCTTGTTTA 34484 Query 62670 GATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA-TCT 62728 | |||| | |||||| ||| || | || ||| |||||| || ||| | || Sbjct 34485 GGTTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTTGAAAATTGAA-CGCACGGTCG 34543 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 ||||| | || || || ||||| || ||||| ||||| || |||| | | Sbjct 34544 TCCACAAATTTCGGTAACGCCACCGATGCGAGGTTACACACGGCCACTTCATCGGGCGAC 34603 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | || | || | ||| ||| | ||||| | || || || | ||| |||||| Sbjct 34604 GTGTACTCAATCACTTCACAGCACAAGTTACTCGATCGAATCGTGCCGAGATTCTGTTGA 34663 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 || ||| || ||| ||||| || || ||||| || || || |||||||| Sbjct 34664 TTCGACTTGCGATTCGCCGCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGG 34723 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 | || | || || ||| | | | || || || | || | | | | Sbjct 34724 GCGTCCAAGATGGCAAACCACAATTGTTGGGCTTTCATGGTC--TTCCGCGCGCGTCCAT 34781 Query 62969 CTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAGTCCA 63025 | | ||||| ||| ||||| ||| |||||| | ||||| |||| || || || Sbjct 34782 CGTGTTCGTACTGTGCGTACAAGTTTTCAAACTCGGCGCCCCAG-CATTCGTACAAACCG 34840 Query 63026 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63085 || ||| | |||||| | || ||||||||| | | | || || |||||||| Sbjct 34841 GGCGCTTCGTTCGGACAGAATAAACTCCACTCTCCATTGGCTTCTACGCGCTTCATAAAC 34900 Query 63086 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCC-TGT 63144 | |||||||||||| | || ||| | ||| | | | |||| |||||| || || Sbjct 34901 AAATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCGATGTAACTCGTTGCCGTGG 34960 Query 63145 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 || | |||| || | ||| | | | || | ||||||||| |||||||| ||||| Sbjct 34961 TTTTTCCGTAAG-TCCAAAAACTCGAGCACGTCGGCATGCCACGGCTCCAAGTAGATGGC 35019 Query 63205 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63264 | || ||||| || || ||||| | || | || || | |||| | || Sbjct 35020 AAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTATCATTAAAGAC 35079 Query 63265 TCTCAACATTGGAATAATACCATTGGATGTACCATTGGT-CCCTGAGATATAGCTTCCAC 63323 | |||||| ||||| || ||||| || | || ||||| ||| || || || || Sbjct 35080 GCGCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGCCCCGA-ATGTAACTGTTGG 35138 Query 63324 TGGCACGAATATTA--CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 63381 | || ||||| ||| | | |||| ||||| || || ||| ||||||||| | || Sbjct 35139 TTGCTCGAATGTTATGCATACTGAT--CCCTATCCCTCCGGCCCATTTAGAGATACAGGC 35196 Query 63382 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGTTAAGTAGAA 63440 ||| |||| | |||||| || || || || || |||||| || || ||| ||||| Sbjct 35197 ACATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTGCATTGCTAA-TAGAA 35255 Query 63441 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAG 63500 |||| |||| |||| | || || ||||| |||||||| || || | ||||| | Sbjct 35256 AACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGGCGTCGCGTGGG 35315 Query 63501 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63560 |||| | |||| || | || | ||||||||| | || | | | || | | | | Sbjct 35316 TAAAAAACTTTTGCGACATGAGCTCGTACGTCTCTAACGCCGCGGCAATGTTGCTCTTGT 35375 Query 63561 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGA 63608 |||| |||| || || ||||| | ||| || || || | ||| |||| Sbjct 35376 GAATCCCTAACGCCACGCGCATAATCATTTGTTGCGGCCGTTCGACGA 35423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633419844165600