Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq18532 120 3e-22 >seq18532 Length=6745 Score = 120 bits (132), Expect = 3e-22 Identities = 143/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| ||||| ||||| || || ||||||| | || |||||| |||| Sbjct 5341 ATGCAGATATTTGTGAAGACCTTGACGGGCAAGACCATCACGTTGGATGTGGAGCCGTCC 5282 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || || || || | || |||| ||| ||||| ||||| || ||||||||| Sbjct 5281 GACACGATTGA--CAATGTTAAGGCCAAAATTCAG-GACAAGGAAGGAATCCCACCTGAC 5225 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||| || | || |||| ||||| ||| ||| ||| Sbjct 5224 CAGCAGCGTCTAATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACACTGGCCGACTAC 5165 Query 25176 AATATTCAAAA 25186 || || ||||| Sbjct 5164 AACATCCAAAA 5154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433186538178590