Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq13324 109 5e-19 >seq13324 Length=6237 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || || || |||| || || ||||| | || Sbjct 5903 ATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTCC 5962 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || ||| |||||||||||||| |||||||| || || || Sbjct 5963 GACACGATTGACAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCAG 6022 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| || ||||||| || || | | ||||||||| Sbjct 6023 CAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATTACAAC 6082 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | ||||| || |||| | || || ||| Sbjct 6083 ATCCAGAAGGAGTCGACGCTGCATTTGGTGCTGCGCCTTCGTGGTGGT 6130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419590977958090