Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq24131 178 2e-39 >seq24131 Length=32940 Score = 178 bits (196), Expect = 2e-39 Identities = 477/725 (66%), Gaps = 11/725 (2%) Strand=Plus/Plus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 ||||| | |||| |||||||| || || || ||||| || |||||||||||||||| Sbjct 30558 TCAAACATGTACTTGCCTTCTTTGCAGCGAGCGATGGCATTGTGAATGAGAACCTGGCCA 30617 Query 42472 CCAGGTTCATGAAAGAGGTGC-AGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATA 42530 | |||| || || || | | ||| ||| || || ||||| |||||||||||||| Sbjct 30618 TGAACTTCAGCAACGAAGTTCAAATAC-CTGAAGCTCGTTGCTTTTACGGCTTCCAGATT 30676 Query 42531 GCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTG 42587 || || ||||| | ||||| || || ||| | ||||||| | ||||| || | Sbjct 30677 GCGATTGAGAATATTCACTCCGAAGTTTACTC---GCTGCTCATTGATACGTATATTAAG 30733 Query 42588 GATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAG 42647 ||| | ||| ||| || || ||||| || || || | || |||| ||| Sbjct 30734 GATGTTATGGAGAAAAACCACCTCTTACGTGCCATCGAAACCATTTCATGTGTCAAAAAG 30793 Query 42648 AAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTG 42707 || || ||||||| || || ||| || | | | ||| || ||| | ||| Sbjct 30794 AAAGCCAACTGGGCACTGAAATGGTGTGATCCGCGTGTATCGTCGTACGCGGAGCGCCTG 30853 Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 |||| ||| || | || || ||||| || ||||| || | || |||||||| ||| Sbjct 30854 TTAGCATTTGCCTCAGTTGAAGGCATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGG 30913 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 ||||| || | | ||||| ||||| | |||||||| || | ||||| | ||| Sbjct 30914 CTCAAAAAGCGCGGGCTCATGCCTGGACTGAGTTTCTCGAATGAGTTAATCAGTCGTGAC 30973 Query 42828 GAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCC 42887 || || |||| | |||||||| || ||| ||| ||||| | ||| |||||| Sbjct 30974 GAAGGTATGCACACAGACTTTGCATGTCTCATGTACTCGAAACTGGTCA---ACAAGCTG 31030 Query 42888 TCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | || || || | | || || ||||| ||| |||||||| | || || | Sbjct 31031 CCAGAGAGCCGTGTGCACGAGATTATTCGTGAGGCTGTGAAGATCGAGCACGAATTTGTG 31090 Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 | || || || || ||| ||||||||||| || ||||||||| ||||||| Sbjct 31091 CGTGATTCCCTTCCTGTTGAACTGATCGGCATGAACTCCGCGCTCATGTGCCAGTACATT 31150 Query 43008 CAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCG 43067 ||| || || |||| | | || | | ||||| | | | || || | | Sbjct 31151 GAGTTTGTTGCTGACCGTTTACTCTACTCTCTGGGTGTGTCCAAGATTTATCACGCAAAG 31210 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 ||| ||||| | ||||| | |||||| | ||||||| |||||||||||||| ||| Sbjct 31211 AACCCATTCGATTGGATGGACATGATCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAG 31270 Query 43128 CGCGT 43132 || || Sbjct 31271 CGTGT 31275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944023011627360