Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5719 132 4e-26 >seq5719 Length=28269 Score = 132 bits (146), Expect = 4e-26 Identities = 212/297 (71%), Gaps = 12/297 (4%) Strand=Plus/Minus Query 20134 CGGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTG-T 20192 ||| || ||||| || | || ||||||||| | |||||||| | || |||| | | Sbjct 20278 CGGGAACGGACGCGGTGCTCGTGTCAGCTGCTTTTGAAGTGGCTCCACGTG-GTTTAGAT 20220 Query 20193 AGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAG 20252 | | || || || || | ||||||||||| || ||| | || ||||| || |||| Sbjct 20219 ACACATGTGCGTCACCGATAACATGAATAAACTCGCCAGGTTTCAGCCCAGTTACTTGAG 20160 Query 20253 CAAGCATATAAGT---TAAG-AGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 ||| |||| |||| || | ||||||||||| ||||| |||||||| | ||| Sbjct 20159 CAAC----TAAGCGCGTAAGCAGCGCGTAGCTGGCAATATTAAAGGGAACTCCAAGCCCC 20104 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||| | || | |||||||| ||||| || | ||||||||| || || || ||||| Sbjct 20103 ATGTCGGCGGAACGCTGATACATTTGACATGACAACTCACCGTCCGCCACGTAGAATTGG 20044 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAG-TCCGCCGGGTTCCACGC 20424 || |||| |||||| || || | |||||| || || ||||| |||||||| || Sbjct 20043 CAAAACATGTGACAAGGTGGCAACGCCAT-TTCGTGGAGATCCGCTGGGTTCCAAGC 19988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441225017352240