Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq13324 102 6e-17 >seq13324 Length=6237 Score = 102 bits (112), Expect = 6e-17 Identities = 160/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || |||||||||| ||| ||||| ||||||||| ||||||||||| | ||| || || Sbjct 6120 AGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAG-CAAGCGTACG 6062 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| || | ||||||||| ||||| || || |||||||| || ||| | | || Sbjct 6061 CCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTC 6002 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 ||||| ||| ||| ||| | | ||| | | || | | || |||| || Sbjct 6001 CTTGTCTTGAATCTTTGCCTTCA-CGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCG 5943 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 | ||||| || || || |||||||||||||| || |||||| || Sbjct 5942 TGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATTGTT 5899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396932777242372