Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq18532 123 6e-23 seq13324 116 9e-21 seq18034 98.7 2e-15 >seq18532 Length=6745 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| || |||||||| || ||||| || || || | || || || || ||||| Sbjct 5154 TTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATT 5213 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | |||||||||||| || ||||| ||||| || || || || || Sbjct 5214 AGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGTCA 5273 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| || || || || | |||||| ||||| || |||| ||||| || ||| Sbjct 5274 ATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAT 5333 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 5334 ATCTGCAT 5341 >seq13324 Length=6237 Score = 116 bits (128), Expect = 9e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||| | ||| || || ||||| || || || || Sbjct 6129 CCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 6070 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||| || ||||| |||| ||| || || || ||||| |||||||| || ||||| Sbjct 6069 AGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGG---TCTGGC 6013 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || || || || |||||||| || || | ||| || || Sbjct 6012 GGAATACCTTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCC 5953 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||||||||| ||||| || ||||| || || || || ||||||||| Sbjct 5952 ACATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATT 5902 >seq18034 Length=23987 Score = 98.7 bits (108), Expect = 2e-15 Identities = 280/425 (66%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 325090 CTCTCCAGATATCAAACGCTTCACATTATCTACGATGTCTTTAGGGTTGTAACTGGGAAT 325149 ||||||| ||||| |||| | | | | |||||| |||||||| ||||||| Sbjct 12893 CTCTCCATTTATCATTTTTTTCAGACTTTGAATGATGTCAACTGGGTTGTAGTTGGGAAT 12952 Query 325150 GTTCGTCGACCATCCGGTTCCGATACCACTCGAT-CCATTCACCAGGATACTCGGAATAA 325208 | ||||| || ||||| || || ||| | || || || || | | ||||| | Sbjct 12953 AGAACTTGACCAACCTGTTCCAATCCCG-TCGCTACCGTTAACGAGCACCATAGGAATGA 13011 Query 325209 CAGGCACATAATACTCTGGTTCGATCTTATCGCCGTCGTCGTACATATATTTCAGAAGAT 325268 || | ||| |||| || || ||| | ||||| || | || ||| || || | || Sbjct 13012 TCGGAATATACCACTCAGGCTCAATCGACTGACCGTCTTCATCCAAATACTTGAGTACAT 13071 Query 325269 TGTCGTCCGTATCGA-CGAAAACCTGTCGAGTCTGAGGGTTCAGTTTCatatatatatat 325327 | |||| | || || | | | ||||| | || | || || | | ||||| Sbjct 13072 CATTGTCCAG-TGGATCGTAGATTCGACGAGTAAGTGGTTCCAAGTTTGTGAAAATATAA 13130 Query 325328 CGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAAC 325387 || |||||||| |||||| |||||| || | || ||||||||| || ||| || Sbjct 13131 CGAGCACTCGCTGAATCCTTGCCACCCATCAGACGCGTACCGAACTGACCGATTGGCGAC 13190 Query 325388 AACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGC 325447 | || ||||| |||||||||||| |||| ||||| | |||||||| |||||| Sbjct 13191 AGAAGGTGAATGTTGTTGCTTCCGACAAAATCTTGTGCCATATTCACGATACAACCTTGC 13250 Query 325448 AGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCA 325507 | | | |||||||| ||||| || |||||| | ||||| || || || ||| Sbjct 13251 AAACTTTGCTCGCCATGATGATAAGCAGAATGCTCAGACACGTAGCCAGCGAGTTGGGCA 13310 Query 325508 ACCTT 325512 ||||| Sbjct 13311 ACCTT 13315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179249547770908