Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq18034 134 3e-26 seq21229 109 1e-18 seq2994 109 1e-18 seq2498 109 1e-18 seq25 109 1e-18 seq24131 93.3 9e-14 >seq18034 Length=23987 Score = 134 bits (148), Expect = 3e-26 Identities = 268/392 (68%), Gaps = 4/392 (1%) Strand=Plus/Plus Query 297244 GATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATTCCACTCGA 297303 |||||| ||| ||||| | || ||| | | |||||||| || || || || ||| Sbjct 12926 GATGTCAACTGGGTTGTAGTTGGGAATAGAACTTGACCAACCTGTTCCAATCCCG-TCGC 12984 Query 297304 -ACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATCTTGTCAC 297362 ||| || || || | | ||||| | || | ||| |||| || || ||| | || Sbjct 12985 TACCGTTAACGAGCACCATAGGAATGATCGGAATATACCACTCAGGCTCAATCGACTGAC 13044 Query 297363 CGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGA-CGAAAACCTGTCGAGTC 297421 |||| |||| || ||| || || | || || |||| | || || | | | ||||| Sbjct 13045 CGTCTTCATCCAAATACTTGAGTACATCATTGTCCAG-TGGATCGTAGATTCGACGAGTA 13103 Query 297422 TGAGGGTTCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAAT 297481 | || | || |||||||||||||| || |||||||| |||||| |||||| || Sbjct 13104 AGTGGTTCCAAGTTTGTGAAAATATAACGAGCACTCGCTGAATCCTTGCCACCCATCAGA 13163 Query 297482 CTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCC 297541 | || ||||||||| || ||| ||| || ||||| |||||||||||| |||| Sbjct 13164 CGCGTACCGAACTGACCGATTGGCGACAGAAGGTGAATGTTGTTGCTTCCGACAAAATCT 13223 Query 297542 TGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGC 297601 ||||| | |||||||| ||||||| | | |||||||| ||||| || |||| Sbjct 13224 TGTGCCATATTCACGATACAACCTTGCAAACTTTGCTCGCCATGATGATAAGCAGAATGC 13283 Query 297602 TCTGCAACGTAACCGCTGAACTGTGCAACCTT 297633 || | ||||| || || || |||||||| Sbjct 13284 TCAGACACGTAGCCAGCGAGTTGGGCAACCTT 13315 >seq21229 Length=38019 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || || |||||||| |||||||||||||| || |||||||| || Sbjct 32062 GGGGAAACCCTCCAGTTGACCGTTAGAAATAGCGCGCATCAACGTGGATTTACCACAACC 32003 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || ||||| |||||||| || | |||||||| | | | || | ||||||||| Sbjct 32002 GTTGGGGCCACATAGACCGTAACGATGACCACGCTTTAAACGAAGACGGGCATTGTTCAG 31943 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 334360 | ||| | |||||||| || || || ||||| |||| |||| ||| | || |||| Sbjct 31942 CAAAATCATACCACCATAGGCAAGCGAGAATTCGCAATTGCACAAGTCCGGAACGCCTTC 31883 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| || || || ||||||| || ||||| ||||||| |||| || || Sbjct 32920 CTCCTTGTCCTCGCCAGACTGGAAACGCCACTGAATATATTGGTTGGCTGTCTCATCGAG 32861 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || |||||||||||||||||||||||| || |||||||||| |||||| ||||| Sbjct 32860 GTGTGACTCGATGTGGTGGAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATG 32801 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 ||||| || || |||||| || | || || || | || |||||| | || Sbjct 32800 TTTCCACACCTGACCACTGGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGA 32741 Query 333494 TTTTCCCGCACCATT 333508 || || |||||||| Sbjct 32740 CTTACCAGCACCATT 32726 >seq2994 Length=27839 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || || |||||||| |||||||||||||| || |||||||| || Sbjct 21882 GGGGAAACCCTCCAGTTGACCGTTAGAAATAGCGCGCATCAACGTGGATTTACCACAACC 21823 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || ||||| |||||||| || | |||||||| | | | || | ||||||||| Sbjct 21822 GTTGGGGCCACATAGACCGTAACGATGACCACGCTTTAAACGAAGACGGGCATTGTTCAG 21763 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 334360 | ||| | |||||||| || || || ||||| |||| |||| ||| | || |||| Sbjct 21762 CAAAATCATACCACCATAGGCAAGCGAGAATTCGCAATTGCACAAGTCCGGAACGCCTTC 21703 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| || || || ||||||| || ||||| ||||||| |||| || || Sbjct 22740 CTCCTTGTCCTCGCCAGACTGGAAACGCCACTGAATATATTGGTTGGCTGTCTCATCGAG 22681 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || |||||||||||||||||||||||| || |||||||||| |||||| ||||| Sbjct 22680 GTGTGACTCGATGTGGTGGAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATG 22621 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 ||||| || || |||||| || | || || || | || |||||| | || Sbjct 22620 TTTCCACACCTGACCACTGGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGA 22561 Query 333494 TTTTCCCGCACCATT 333508 || || |||||||| Sbjct 22560 CTTACCAGCACCATT 22546 >seq2498 Length=6471 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || || |||||||| |||||||||||||| || |||||||| || Sbjct 4588 GGGGAAACCCTCCAGTTGACCGTTAGAAATAGCGCGCATCAACGTGGATTTACCACAACC 4529 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || ||||| |||||||| || | |||||||| | | | || | ||||||||| Sbjct 4528 GTTGGGGCCACATAGACCGTAACGATGACCACGCTTTAAACGAAGACGGGCATTGTTCAG 4469 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 334360 | ||| | |||||||| || || || ||||| |||| |||| ||| | || |||| Sbjct 4468 CAAAATCATACCACCATAGGCAAGCGAGAATTCGCAATTGCACAAGTCCGGAACGCCTTC 4409 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| || || || ||||||| || ||||| ||||||| |||| || || Sbjct 5446 CTCCTTGTCCTCGCCAGACTGGAAACGCCACTGAATATATTGGTTGGCTGTCTCATCGAG 5387 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || |||||||||||||||||||||||| || |||||||||| |||||| ||||| Sbjct 5386 GTGTGACTCGATGTGGTGGAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATG 5327 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 ||||| || || |||||| || | || || || | || |||||| | || Sbjct 5326 TTTCCACACCTGACCACTGGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGA 5267 Query 333494 TTTTCCCGCACCATT 333508 || || |||||||| Sbjct 5266 CTTACCAGCACCATT 5252 >seq25 Length=40886 Score = 109 bits (120), Expect = 1e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 334181 GGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCC 334240 |||||| || || || |||||||| |||||||||||||| || |||||||| || Sbjct 34929 GGGGAAACCCTCCAGTTGACCGTTAGAAATAGCGCGCATCAACGTGGATTTACCACAACC 34870 Query 334241 GTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAG 334300 ||| || ||||| |||||||| || | |||||||| | | | || | ||||||||| Sbjct 34869 GTTGGGGCCACATAGACCGTAACGATGACCACGCTTTAAACGAAGACGGGCATTGTTCAG 34810 Query 334301 AAGAATTTTTCCACCATATGCCAGAGAAAATTCACAATCACACAGATCCTCACCGACTTC 334360 | ||| | |||||||| || || || ||||| |||| |||| ||| | || |||| Sbjct 34809 CAAAATCATACCACCATAGGCAAGCGAGAATTCGCAATTGCACAAGTCCGGAACGCCTTC 34750 Score = 104 bits (114), Expect = 5e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 333314 CTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAG 333373 ||| ||||| || || || ||||||| || ||||| ||||||| |||| || || Sbjct 35787 CTCCTTGTCCTCGCCAGACTGGAAACGCCACTGAATATATTGGTTGGCTGTCTCATCGAG 35728 Query 333374 ATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATG 333433 || |||||||||||||||||||||||| || |||||||||| |||||| ||||| Sbjct 35727 GTGTGACTCGATGTGGTGGAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATG 35668 Query 333434 CTTCCAAACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCT 333493 ||||| || || |||||| || | || || || | || |||||| | || Sbjct 35667 TTTCCACACCTGACCACTGGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGA 35608 Query 333494 TTTTCCCGCACCATT 333508 || || |||||||| Sbjct 35607 CTTACCAGCACCATT 35593 >seq24131 Length=32940 Score = 93.3 bits (102), Expect = 9e-14 Identities = 279/424 (66%), Gaps = 14/424 (3%) Strand=Plus/Plus Query 243319 GTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGT 243378 |||||||| ||| | || || || ||| || ||||||||||||| || || Sbjct 30869 GTTGAAGGCATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGG 30928 Query 243379 GTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAA 243438 | |||||||| || || | || || ||||| |||||||| ||||| || | ||| | Sbjct 30929 CTCATGCCTGGACTGAGTTTCTCGAATGAGTTAATCAGTCGTGACGAAGGTATGCACACA 30988 Query 243439 CAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAA 243497 | || | || ||||| || || || |||||||| ||| || || || | Sbjct 30989 GACTTTGCATGTCTCATGTACTCGAAACTGGTCAACAAGCTGCCAGA-GAGCCGTGTGCA 31047 Query 243498 ACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATG 243557 | || || || || || | | ||| | ||||| || | || ||||| | Sbjct 31048 CGAGATTATTCGTGAGGCTGTGAAGATCGAGCACGAATT----TGTG-CGTGATTCCCTT 31102 Query 243558 CCGG-----CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || | || || ||||||||||| | |||||| | |||||||| || || || || Sbjct 31103 CCTGTTGAACTGATCGGCATGAACTCCGCGCTCATGTGCCAGTACATTGAGTTTGTTGCT 31162 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGC 243671 ||||| | || | | || ||| || ||| | || || | |||||||| || | Sbjct 31163 GACCGTTTACTCTACTCTCTGGGTG-TGTCCAAGATTTATCACGCAAAGAACCCATTCGA 31221 Query 243672 CTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGA 243731 | ||||| | || ||||| || || ||||| ||||| |||||||||||||| |||| Sbjct 31222 TTGGATGGACATGATCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAGCGTGTGGGTGA 31281 Query 243732 TTAT 243735 ||| Sbjct 31282 ATAT 31285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102501496409100