Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq24131 100 3e-16 seq18034 93.3 5e-14 >seq24131 Length=32940 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| ||| ||| | ||| |||||||| ||| | ||||||||||| | |||||| Sbjct 30996 GCAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGTCCA 30937 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 |||||||| || ||||| || | ||| || || | |||||| ||||| ||||| || || Sbjct 30936 GGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATG 30877 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGC 126201 || || || | || || || || || ||||| || Sbjct 30876 CCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGC 30842 >seq18034 Length=23987 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 ||||||| ||||| || ||| | ||||| ||||| ||||| |||| | || ||||| Sbjct 12964 AACCTGTTCCAATCCCGTCGCTACCGTTAACGAGCACCATAGGAATGATCGGAATATACC 13023 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | || || ||||||| | || || ||||||||||| ||||| || | |||| | Sbjct 13024 ACTCAGGCTCAATCGACTGACCGTCTTCATCCAAATACTTGAGTACATCATTGTCCAGTG 13083 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGT--GAGTTTTGTGAAGATGTACCTCGTTTGAGA 171903 |||| ||||| ||||| | |||| | |||||||| || || | | | Sbjct 13084 GATCGTAGATTCGACGAG--TAAGTGGTTCCAAGTTTGTGAAAATATAACGAGCACTCGC 13141 Query 171904 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACC 171942 | ||| ||||||||||| |||||||| || || ||||| Sbjct 13142 TGAATCCTTGCCACCCATCAGACGCGTACCGAACTGACC 13180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597153591080880