Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq13324 141 1e-28 seq18532 122 9e-23 >seq13324 Length=6237 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||||||||| || |||||| || || ||||||||||| || || ||| || Sbjct 6117 CGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCG 6058 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || ||||| ||||| ||||| || || || ||||||||||| | || | | |||||| Sbjct 6057 TCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTG 5998 Query 42114 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| | |||| | ||| | | | ||||||| || |||||||||| |||||| Sbjct 5997 T-CTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGAT 5939 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || |||||||| || || || ||||| || |||||| Sbjct 5938 TGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATT 5902 >seq18532 Length=6745 Score = 122 bits (134), Expect = 9e-23 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 ||||||| || ||||| || ||||| || || | || || |||||||| ||||| || | Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | ||| | | ||||||||| ||| |||| | | | | | | Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCC-TGAATTTTGGCCTTAACATTG 5270 Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||| || |||||||| | ||||||||| |||||||| | ||||| ||| Sbjct 5271 TCAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5330 Query 42198 AAGATTTGCAT 42208 || || ||||| Sbjct 5331 AATATCTGCAT 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543030918774240