Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq13324 122 9e-23 seq15263 113 5e-20 seq18532 104 2e-17 seq2613 98.7 1e-15 >seq13324 Length=6237 Score = 122 bits (134), Expect = 9e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | |||||| || || || ||||||||||| || | || ||| |||| Sbjct 6114 AGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCGTCC 6055 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || |||||||| ||| | || || ||||||||||| || ||||| ||||| || ||| Sbjct 6054 TCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCT 5995 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGT 64410 || || ||| ||| || || | || || |||| ||||| || | || | || Sbjct 5994 TGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGC-TCCACATCGAGCGTGATTGT 5936 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| |||| ||||| || ||||| |||||| Sbjct 5935 CTTGCCCGTCAGTGTTTTCACAAAAATCTGCATT 5902 >seq15263 Length=38747 Score = 113 bits (124), Expect = 5e-20 Identities = 342/528 (65%), Gaps = 3/528 (1%) Strand=Plus/Plus Query 154901 TTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTT 154960 || |||||| |||||||||||||| || | |||||| || || ||||||||||| ||| Sbjct 34882 TTCTACGCGCTTCATAAACAAATCAGGAATCCACAAGGCATAAAACAAATCACGTGCCCG 34941 Query 154961 TTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCA 155020 | || ||| |||| | ||| | |||||| || | |||||| ||||| Sbjct 34942 ATGTAACTCGTTGCCGTGGTTTTTCCGTAAGTCCAAAAACTCGAGCACGTCGGCATGCCA 35001 Query 155021 CGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTCCTTGATCCACGTGACG 155077 |||||| || || | ||| | || |||||||||||| || ||||||||||| | || Sbjct 35002 CGGCTCCAAGTAGATGGCAAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCG 35061 Query 155078 CACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCC 155137 | || ||| | |||||||||| || | || | | | |||||||||||| Sbjct 35062 TGCCGTATCATTAAAGACGCGCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGCC 35121 Query 155138 ACGTATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCCGCCGTA 155197 || || ||| | || || ||||| | | | | || | |||||| | | Sbjct 35122 CCGAATGTAACTGTTGGTTGCTCGAATGTTATGCATACTGATCCCTATCCCTCCGGCCCA 35181 Query 155198 TTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTT 155257 |||||| || ||||| | | || ||||| || |||| || || |||| Sbjct 35182 TTTAGAGATACAGGCACATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTG 35241 Query 155258 CAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGCAGCCGGCCGCAAATAATGT 155317 || | || | |||||||| || ||||| || | || || || |||||| || Sbjct 35242 CATTGCTAATAGAAAACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGT 35301 Query 155318 AGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGTAAGTTTCGATGGCGGCGTC 155377 || | ||||| ||||| | || | | | | | ||| || || | || ||| | Sbjct 35302 TGGCGTCGCGTGGGTAAAAAACTTTTGCGACATGAGCTCGTACGTCTCTAACGCCGCGGC 35361 Query 155378 AATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCATGTGTTG 155425 ||||| | ||| || || | |||||||||||| | ||| ||||| Sbjct 35362 AATGTTGCTCTTGTGAATCCCTAACGCCACGCGCATAATCATTTGTTG 35409 >seq18532 Length=6745 Score = 104 bits (114), Expect = 2e-17 Identities = 138/189 (73%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 ||||| |||||||| || || | ||||| | || || ||||||||||| ||| | || Sbjct 5154 TTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATT 5213 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| || || |||||||| || || || ||||| ||| ||| || Sbjct 5214 AGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGTCA 5273 Query 64376 ACTGTATC-ACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | || || |||| ||||| || | || | ||||||||| ||||| || || || || Sbjct 5274 ATCGTGTCGGACGGC-TCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAAA 5332 Query 64435 AATTTGCAT 64443 || ||||| Sbjct 5333 TATCTGCAT 5341 >seq2613 Length=31273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | || | ||||| || |||||||||||||| || |||| | || |||| Sbjct 12288 AAGCACCAAGTGTAGAGTCGACTCCTTTTGAATGTTGTAGTCCGCGAGAGAACGGCCGTC 12229 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 |||||||||||||| ||| | || || ||||||||||| |||||||||||| Sbjct 12228 CTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGAATTCCT 12177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499477506429840