Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq15263 125 7e-24 >seq15263 Length=38747 Score = 125 bits (138), Expect = 7e-24 Identities = 422/652 (65%), Gaps = 10/652 (2%) Strand=Plus/Minus Query 93907 TTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAA--CAAGG 93964 || ||||||||||| || ||| || |||| |||||||| || || | || |||| Sbjct 35295 TTTAACGCGGGGACACCCCGGCCCCAATTGTCCTCGTGTTTTCT-ATTAGCAATGCAAGA 35237 Query 93965 CCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACG 94024 || || || || |||| ||| | || || | ||||| ||||| |||| | Sbjct 35236 T-GATTCGATTGAAGGGATTTACGATACGCTTAAACAATGTGCCTGTATCTCTAAATGGG 35178 Query 94025 CGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGC---CAGGGGTTCCTACATCCGCG 94081 | || || || ||||||||| | || || | || || || ||| |||| || | Sbjct 35177 CCGGAGGGATAGGGATCAGTATGCATAACATTCGAGCAACCAACAGTT---ACATTCGGG 35121 Query 94082 GTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGC 94141 | ||||| ||| |||| || || || | || ||| | || ||||| || | |||| | Sbjct 35120 GCACCAACGGCTCCTCGAATGGGATCATTCCCATGTTGCGCGTCTTTAATGATACGGCAC 35061 Query 94142 GCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCT 94201 | || ||||| || || || |||| | || || || || || |||| | ||||| | Sbjct 35060 GGTATGTGGATCAAGGCGGCGGGAAACGCAAAGGCTCGTTTGCCATCTACTTGGAGCCGT 35001 Query 94202 GGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA 94261 |||| || ||||||| | || | ||| | || || |||||||||||||| | | Sbjct 35000 GGCATGCCGACGTGCTCGAGTTTTTGGACTTACGGAAAAACCACGGCAACGAGTTACATC 34941 Query 94262 GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGA 94321 |||| | || | || || || | ||| | || || | |||||||| ||||| || Sbjct 34940 GGGCACGTGATTTGTTTTATGCCTTGTGGATTCCTGATTTGTTTATGAAGCGCGTAGAAG 34881 Query 94322 AAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTG 94381 || | |||||| | || ||||| || ||| ||||| ||| ||| || | Sbjct 34880 CCAATGGAGAGTGGAGTTTATTCTGTCCGAACGAAGCGCCCGGTTTGTACGAATGCTGGG 34821 Query 94382 GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTA 94441 | | |||||| ||||||| || | |||||| | || || ||||| | Sbjct 34820 GCGCCGAGTTTGAAAACTTGTACGCACAGTACGAACACGATGGACGCGCGCGGAAGACCA 34761 Query 94442 TGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCT 94501 || | || | ||||| | ||| |||||| ||| | |||||||| ||| | Sbjct 34760 TGAAAGCCCAACAATTGTGGTTTGCCATCTTGGACGCCCAGATTGAGACGGGCGTGCCGT 34701 Query 94502 ACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||| ||| ||||||| | | || |||||| || || ||| | ||||| Sbjct 34700 TCATGCTGTACAAGGACGCGGCGAATCGCAAGTCGAATCAACAGAATCTCGG 34649 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| || |||| ||||| |||||||| || || || ||||||||||| ||||||||||| Sbjct 34128 AACTCGTTGCTCGTGGCGCCCATGCCAACAGCTTCGACGGCGCAGATTCTTGGCAACAAT 34069 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 || ||| | ||||| | || ||||| ||||||| |||| || | ||||| || || Sbjct 34068 GAATCGATTGAACCGTATACGTCCAATATGTACAATCGGCGCGTCTTGGCCGGCGAGTT 34010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494557554304560