Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13324 134 1e-26 seq18532 113 4e-20 seq15263 102 8e-17 >seq13324 Length=6237 Score = 134 bits (148), Expect = 1e-26 Identities = 181/247 (73%), Gaps = 5/247 (2%) Strand=Plus/Minus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 |||| || ||||| | | |||||||| || |||||||| || | |||||| | Sbjct 6117 CGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCG 6058 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| ||||| || || | | ||||||||||||| ||||| || || |||||||| ||| Sbjct 6057 TCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTG 5998 Query 138520 TCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 || ||| | |||| || | ||| || | ||||||| || |||||| |||| ||| | Sbjct 5997 TC-TTGAATCTTTGCCTTCACGTTG-TCAATCGTGTCGGACGGCTCCACATCGAGCGTGA 5940 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCTTATAATATTATTCCGTTCC 138637 || || || ||||| ||||| |||||||||||||| | | ||| || || | || | Sbjct 5939 TTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATTGTTGTGAATGTTGTT-CTTTTC 5881 Query 138638 TCTTACT 138644 |||| || Sbjct 5880 TCTTGCT 5874 >seq18532 Length=6745 Score = 113 bits (124), Expect = 4e-20 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 ||||||| |||||||||||| || || || |||||||| || || || | | ||| Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTG 138542 |||||||||| ||||| || || || ||||| ||||| ||| |||| | ||| |||| Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTC-CTGAATTTTGGCCTTAACATTG 5270 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||||| || |||||| || | ||| | || || || |||| || || || Sbjct 5271 -TCAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCAC 5329 Query 138603 AAAAATCTGCATG 138615 ||| ||||||||| Sbjct 5330 AAATATCTGCATG 5342 >seq15263 Length=38747 Score = 102 bits (112), Expect = 8e-17 Identities = 222/327 (68%), Gaps = 8/327 (2%) Strand=Plus/Plus Query 152959 GTGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGA 153018 |||||||| | | ||| || | ||| ||||| | | | || | |||||| |||| | Sbjct 33928 GTGCAAAATTTG-GTTGCGCACTTCAGGCGTCCAAAGGCCGAGATCAATGAGCTCATTCA 33986 Query 153019 TCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGC 153078 |||| || | ||| || | ||||||||| ||||| || || | || | |||| Sbjct 33987 TCAAATATTTGTTCACAATCGTAAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGG 34046 Query 153079 TAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCA 153138 || | ||||||| ||||| || ||||| || || || ||||| | || || |||| Sbjct 34047 ACGTATACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCA 34106 Query 153139 TGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC--GCTCGAATGTCGTCCTTCAACGC 153196 || |||||| | ||| || || || | |||| | | || ||| |||||||| | Sbjct 34107 TGGGCGCCACGAGCAACGAGTTGCGAATCCCGTACTTGATCACCTGT--TCCTTCAATGT 34164 Query 153197 CTGCCAATCCCAC-AGC--GCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCC 153253 | |||||||||| ||| | ||||||||| || ||||| || |||| || | || Sbjct 34165 GTTCCAATCCCACAAGCCTGAGGACGGTGTCACGCCCCACAAATCAAACTGGAAGATCCC 34224 Query 153254 TCGACTGGCGGGACTGCCGGCAAACGT 153280 | ||| || || ||| |||||||| Sbjct 34225 TTTACTCGCAGGGGAGCCTGCAAACGT 34251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496096238941920