Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq13324 87.8 1e-12 >seq13324 Length=6237 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || || || ||||||||||| || | | | |||| ||| Sbjct 6111 ACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCGTCCTCT 6052 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| |||||||| | || | |||||| ||||| ||||| ||||||||||| | Sbjct 6051 AGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCTTGA 5992 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||| || || | || || || ||| || || || | || || || || Sbjct 5991 ATCTTTGC-CTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGATTGTCTT 5933 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| |||||||| ||||| Sbjct 5932 GCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357275327818010