Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq15263 145 7e-30 seq13324 111 1e-19 seq24131 91.5 1e-13 >seq15263 Length=38747 Score = 145 bits (160), Expect = 7e-30 Identities = 297/436 (68%), Gaps = 8/436 (2%) Strand=Plus/Plus Query 145764 ATAGTACATGCCGGTCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACATGAC 145823 |||||||||||| || || || || | ||| | ||||||||| ||| ||| ||| Sbjct 33697 ATAGTACATGCCCGTTTTCAGTCCCTTTTTCCATGCGTAAAAGTGCATG---GACGTGAG 33753 Query 145824 CG-AGTA--CGTGGGTTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGG 145880 | || ||| || ||||| | | | ||||| || || |||||| |||| | | Sbjct 33754 TTTACTAATCGTCGGGTCGGCAATATGAATGTTTAGCGACTGACTCTGACAAATGTACGC 33813 Query 145881 AGCCCGGTCGGCGGCCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAA 145940 | || ||||| || | || | || | |||| |||||||||||| | || || | Sbjct 33814 GCCACGATCGGCCGCAAGATCGAGCACGGCCTTTTGTTTAATTTCCCACACTGTCTTGTA 33873 Query 145941 GAGATCCTTGACGTGCTGGGGTAT-TTCGTCAATGTTCTGCACAGACCCATTTTCGGCCA 145999 ||||||||||| |||| || || ||| | || || || |||||| ||| || Sbjct 33874 CTTTTCCTTGACGTGAGGGGGAATGTTTTTCACT-TTTTGTACGGACCCACCGTCGTGCA 33932 Query 146000 ATATTTTGTTGCGCAATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGAT 146059 | |||| |||||||| ||| || || ||| | | || | ||| | || || | || Sbjct 33933 AAATTTGGTTGCGCACTTCAGGCGTCCAAAGGCCGAGATCAATGAGCTCATTCATCAAAT 33992 Query 146060 ACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGA 146119 | | ||| || | | |||||||||||| | ||||||| |||| ||| || Sbjct 33993 ATTTGTTCACAATCGTAAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGACGTAT 34052 Query 146120 ACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACG 146179 |||| || | ||| || ||||| || || ||||||||||||| ||| || |||||| || Sbjct 34053 ACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATGGGCG 34112 Query 146180 CCACCAGCAAAGAGTT 146195 |||| ||||| ||||| Sbjct 34113 CCACGAGCAACGAGTT 34128 >seq13324 Length=6237 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||||||| | ||| ||||| || || || |||||||| | Sbjct 6129 CCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 6070 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || || ||||| || || ||||| |||| | |||||||| || || || Sbjct 6069 AGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGA 6010 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || |||||||| ||| | | ||| || | ||||| | | ||||| | ||| | Sbjct 6009 ATACCTTCCTTGTCT-TGAATCTTTGCCTTCACGTTGT-CAATCGTGTCGGACGGCTCCA 5952 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| || | || ||||| ||||| ||||| |||||||||||||| Sbjct 5951 CATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq24131 Length=32940 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47485 CCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCA 47544 |||||||||| ||| | |||| |||||||| | ||| ||| || |||||| |||||| Sbjct 31191 CCAAGATTTATCACGCAAAGAACCCATTCGATTGGATGGACATGATCTCGCTCCAGGGCA 31250 Query 47545 AGACCAACTTTTTCGAGAAGCGCGTCGGCGAATAT 47579 | |||||||||||||| ||||| || || |||||| Sbjct 31251 AAACCAACTTTTTCGAAAAGCGTGTGGGTGAATAT 31285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475341590444640