Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq24131 105 8e-18 seq18034 84.2 3e-11 >seq24131 Length=32940 Score = 105 bits (116), Expect = 8e-18 Identities = 373/575 (65%), Gaps = 6/575 (1%) Strand=Plus/Minus Query 127232 TAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCATA 127291 || || || || ||||| ||||| ||||| || || || | ||| ||| | ||||| Sbjct 31284 TATTCACCCACACGCTTTTCGAAAAAGTTGGTTTTGCCCTGGAGCGAGATCATGTCCATC 31225 Query 127292 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACGA 127351 |||| ||||||||||||| || |||| | | ||| || | | ||| | ||| Sbjct 31224 CAATCGAATGGGTTCTTTGCGTGATAAATCTTGGACACACCCAGAGAGTAGAGTAAACGG 31165 Query 127352 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACAT 127411 || | || |||||||||||| |||| | | |||||||| ||||| || | | Sbjct 31164 TCAGCAACAAACTCAATGTACTGGCACATGAGCGCGGAGTTCATGCCGATCAGTTCAACA 31105 Query 127412 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGTGA 127471 || || | || | || | | ||| || | |||||| || || | || |||| Sbjct 31104 GGAAGGGAATCACGCACAAATTCGTGCTCGATCTTCACAGCCTCACGAATAATCTCGTGC 31045 Query 127472 ATAGTGTCCACCC-CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACA-GCAAACTCTT 127529 | | | | | ||| | | ||| | || | | | | ||| ||||| ||| Sbjct 31044 ACACGGCTCTCTGGCAGCT-TGTTGACCAGTTTCGAGTACA-TGAGACATGCAAAGTCTG 30987 Query 127530 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 127589 ||| | ||| |||||||| ||| | ||||||||||| | ||| || |||||||| | Sbjct 30986 TGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGTCCAGGCATGAGCC 30927 Query 127590 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 127649 | ||||| || | ||| || || | |||||| || || ||||| || || || || || Sbjct 30926 CGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATGCCTTCAACTG 30867 Query 127650 ACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCATC 127708 | || || || || || ||||| || | || || || | |||| |||| |||| Sbjct 30866 AGGCAAATGCTAACAGGCGCTCCGCGTACGA-CGATACACGCGGATCACACCATTTCAGT 30808 Query 127709 GCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| | || || || | || ||||| | ||| | ||| || ||||| | || Sbjct 30807 GCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACGTAAGAGGTGGTTT 30748 Query 127769 TTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 || || ||| || || ||| |||| ||||| Sbjct 30747 TTCTCCATAACATCCTTAATATACGTATCAATGAG 30713 >seq18034 Length=23987 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 ||||||| ||||| || ||| | ||||| ||||| ||||| |||| | || ||||| Sbjct 12964 AACCTGTTCCAATCCCGTCGCTACCGTTAACGAGCACCATAGGAATGATCGGAATATACC 13023 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | || || ||||||| | || || || |||||||| ||||| || | ||| | Sbjct 13024 ACTCAGGCTCAATCGACTGACCGTCTTCATCCAAATACTTGAGTACATCATTGTCCAGTG 13083 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTG--AGTTTTGTGAAGATGTACCTCGTTTGAGA 175923 |||| ||||| ||||| | |||| | |||||||| || || | | | Sbjct 13084 GATCGTAGATTCGACGAGTAAG--TGGTTCCAAGTTTGTGAAAATATAACGAGCACTCGC 13141 Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACC 175962 | ||| ||||||||||| |||||||| || || ||||| Sbjct 13142 TGAATCCTTGCCACCCATCAGACGCGTACCGAACTGACC 13180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613301782451760