Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq15263 96.9 6e-15 >seq15263 Length=38747 Score = 96.9 bits (106), Expect = 6e-15 Identities = 161/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACATG 203896 |||||||| ||||| ||||| || | |||| || | | | | |||||||||| Sbjct 33650 TTGTCCACAGTGAATTGAATCGCAT---CGGCTTTGGGTCGACCCCGTAAATAGTACATG 33706 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || || || || ||||| | ||| |||| | ||||||||| | ||||| || | | Sbjct 33707 CCCGTTTTCAGTCCCTTTTTCCATGCGTAAAAGTGCATGGACGTGAGTTTACTAATCGTC 33766 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGC 204015 |||||||| || |||||||| || ||||| || || ||| | ||||| ||||| || Sbjct 33767 GGGTCGGCAATATGAATGTTTAGCGACTGACTCTGACAAATG-TACGCGCCACGATCGGC 33825 Query 204016 GGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAAC 204064 || | || || | || ||| || ||| |||||||| |||||| || Sbjct 33826 CGCAAGATCGAGCACGGCCTTTTGTTTAATTTCCCACACTGTCTTGTAC 33874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794888962160160