Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq13324 127 2e-24 seq18532 122 1e-22 >seq13324 Length=6237 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| || |||||| ||||| ||||| || | || || ||| || Sbjct 6117 CGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCG 6058 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || || |||||||| || || || | ||||||||||| | ||| | | |||||| Sbjct 6057 TCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTG 5998 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCAC-CGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||| ||| | ||| | || ||||||| || |||||||| | |||||| Sbjct 5997 TCTTGAATCTTTGCCTTCA-CGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGAT 5939 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || ||||||||||| ||||| ||||| || |||||| Sbjct 5938 TGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATT 5902 >seq18532 Length=6745 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||||||||| |||||||||| || ||||| | || |||||||||||||| || || | Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 | | ||||||||||| | || | | ||||||||| || || ||| | | Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGT 5271 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | ||||||| || |||||||||| ||||||||| |||||||||| || || |||| Sbjct 5272 CAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5331 Query 46584 AGATTTGCAT 46593 | || ||||| Sbjct 5332 ATATCTGCAT 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565049144052720