Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq24131 145 8e-30 seq13324 132 5e-26 seq18532 104 2e-17 >seq24131 Length=32940 Score = 145 bits (160), Expect = 8e-30 Identities = 366/552 (66%), Gaps = 6/552 (1%) Strand=Plus/Minus Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 |||| ||| || |||||||| ||||| |||||||||||||| |||| ||| || Sbjct 30949 GAAACTCAGTCCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACC 30890 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 || || || | ||| || || | || || || | ||||||||| || ||| | | | Sbjct 30889 TGAGAAAAAAATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGACGATAC 30830 Query 133065 TTTGCTGGCGAT-CCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || | | ||| ||| ||||| | ||| || | |||||| || | || |||| Sbjct 30829 AC-GCGGATCACACCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTT 30771 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAG 133181 ||||||| || | || |||||| | | | | | || || || ||||| Sbjct 30770 CGATGGCACGTAAGAGGTGGTTTTTCTC--CATAACATCCTTAATATACGTATCAATGAG 30713 Query 133182 GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCG 133241 ||| || | ||| ||||| | ||||| || || || || |||||||||||||| || Sbjct 30712 CAGCGAGTAAACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACG 30653 Query 133242 CGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCC 133301 || || | || ||||| | ||| | | |||| || || || || ||||| Sbjct 30652 AGCTTCAGGTATTTGAACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCATTCACAATGCC 30593 Query 133302 GTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAA 133361 ||||| || || || ||||| || || || ||||| || || ||||| ||||| | | Sbjct 30592 ATCGCTCGCTGCAAAGAAGGCAAGTACATGTTTGATAAAGTGACGCTCATTGTCCGTAAG 30533 Query 133362 GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGC 133421 | ||||||| ||| | || |||| ||||||| | ||||| ||||| || Sbjct 30532 ATTCACCCAGTCCTTAAGGTCATGTACCAAATCCAACTCCTCGGCCGTCCAGAACGAAGC 30473 Query 133422 CTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCG 133481 ||| ||||| |||||||| ||||| || | || |||||||| | |||||| || Sbjct 30472 CTCAGCTTTCTTGTACATCTGCCACACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCG 30413 Query 133482 GCGGGGGTTTTC 133493 | ||| || || Sbjct 30412 GTTGGGATTCTC 30401 >seq13324 Length=6237 Score = 132 bits (146), Expect = 5e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || || || ||||| || |||||||| || ||||| |||| || ||| | Sbjct 5899 AACAATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCC 5958 Query 38300 CACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 |||||| | || |||| | || | ||| || | ||||| || || ||||| | | Sbjct 5959 GTCCGACACGATTGACAACG-TGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAG 6017 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | || ||||| || || || |||| ||| || || || | Sbjct 6018 ACCAGCAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATT 6077 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| ||||| |||||||||||||||||||||| Sbjct 6078 ACAACATCCAGAAGGAGTCGACGCTGCATTTGGTGCTGCG 6117 >seq18532 Length=6745 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || || || | |||||||| |||||||| | || || ||| | || Sbjct 5341 ATGCAGATATTTGTGAAGACCTTGACGGGCAAGACCATCACGTTGGATGTGGAGCCGTCC 5282 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | |||| | ||||| | ||||| || ||||| || | ||||| Sbjct 5281 GACACGATTGACAATG-TTAAGGCCAAAATTCAGGACAAGGAAGGAATCCCACCTGACCA 5223 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| ||||| || || | ||||| || ||||||||| Sbjct 5222 GCAGCGTCTAATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACACTGGCCGACTACAA 5163 Query 38423 CATCCAAAAGG 38433 ||||||||||| Sbjct 5162 CATCCAAAAGG 5152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500005329642240