Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq10947 150 7e-31 seq1489 111 6e-19 seq13295 96.9 1e-14 seq7621 96.9 1e-14 seq13324 86.0 2e-11 >seq10947 Length=55706 Score = 150 bits (166), Expect = 7e-31 Identities = 266/385 (69%), Gaps = 6/385 (2%) Strand=Plus/Plus Query 451222 AGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAA 451281 ||| ||||| ||||| || || |||||||||||||| ||||| | || || ||| Sbjct 42099 AGGCGAAACGAAAACGTTCCAGCCGGAAGAAATTTCATCCATGGTGTTGACCAAGATGCG 42158 Query 451282 AGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGC 451341 ||| | || ||| |||||||| | ||| | ||||||| | || || || || Sbjct 42159 AGATATTGCCGAAGCGTATATTGGAAAGCAAGTGAAGAATGCAGTGGTGACAGTCCCTGC 42218 Query 451342 TTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAA 451401 |||||||||||| | || || || || || |||||||||||| ||||| || ||||| Sbjct 42219 CTATTTCAATGATTCGCAGCGTCAGGCCACGAAAGATGCAGGAGTGATTGCAGGGTTAAA 42278 Query 451402 TGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATC 451461 ||| | || |||||||| || || || || || || | || || || || ||| | Sbjct 42279 TGTATTGCGGATTATTAACGAGCCGACGGCGGCAGCGATCGCGTACGGGCT-GGA----C 42333 Query 451462 AAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATAC 451521 || | | || || | ||| | || | |||||||| || ||||| || |||| Sbjct 42334 AAGA-AGGGAGGCGAGCACAATGTATTGATTTTTGATTTGGGAGGAGGCACGTTTGATGT 42392 Query 451522 TTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCA 451581 || || | |||||||| || | ||||| || || || || ||| ||||| || Sbjct 42393 GTCGCTATTGAGTATTGAAGAAGGAATTTTTGAGGTGAAAGCTACTGCTGGCGATACGCA 42452 Query 451582 TCTAGGAGGTGAAGATATTGATAAT 451606 | |||| ||||||||| |||||||| Sbjct 42453 TTTAGGCGGTGAAGATTTTGATAAT 42477 Score = 136 bits (150), Expect = 2e-26 Identities = 208/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 |||||||||||||| || |||||||||||||| || || ||| | ||||| || ||| Sbjct 42782 GATAACCAACCAGGCGTCTTGATTCAAGTGTTTGAGGGCGAGCGTACGATGACTCGTGAT 42841 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 ||| || || || | |||| |||| || || || |||||| |||| |||| Sbjct 42842 AATCATCTCCTTGGGAAGTTTAGTCTTGATGGGATCCCACCCATGCCACGGGGTGTTCCT 42901 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||| || |||||| |||| | ||||| ||||| || || ||||| ||| || ||| Sbjct 42902 CAAATCGATGTTACCTTTGATATCGATGCCAATGGCATACTGAATGTATCTGCTGTGGAA 42961 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 || || | || ||| |||| || ||||| ||||| ||||| ||| || | || | Sbjct 42962 AAGTCGACGGGGAAA-GAGAACAAGATTACGATTACGAATGACAAAGGGCGGCTGTCCCA 43020 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| || ||||| | ||| || || || | |||||||| ||||| Sbjct 43021 GGCCGATATCGACCGGATGGTCGCTGATGCGGACAAGTATAAGGATGAAGATGA 43074 Score = 136 bits (150), Expect = 2e-26 Identities = 208/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 452198 GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGAT 452257 |||||||||||||| || |||||||||||||| || || ||| | ||||| || ||| Sbjct 46237 GATAACCAACCAGGCGTCTTGATTCAAGTGTTTGAGGGCGAGCGTACGATGACTCGTGAT 46296 Query 452258 AATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCT 452317 ||| || || || | |||| |||| || || || |||||| |||| |||| Sbjct 46297 AATCATCTCCTTGGGAAGTTTAGTCTTGATGGGATCCCACCCATGCCACGGGGTGTTCCT 46356 Query 452318 CAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAA 452377 ||||| || |||||| |||| | ||||| ||||| || || ||||| ||| || ||| Sbjct 46357 CAAATCGATGTTACCTTTGATATCGATGCCAATGGCATACTGAATGTATCTGCTGTGGAA 46416 Query 452378 AAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAA 452436 || || | || ||| |||| || ||||| ||||| ||||| ||| || | || | Sbjct 46417 AAGTCGACGGGGAAA-GAGAACAAGATTACGATTACGAATGACAAAGGGCGGCTGTCCCA 46475 Query 452437 AGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 | ||||| || ||||| | ||| || || || | |||||||| ||||| Sbjct 46476 GGCCGATATCGACCGGATGGTCGCTGATGCGGACAAGTATAAGGATGAAGATGA 46529 >seq1489 Length=35436 Score = 111 bits (122), Expect = 6e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 451259 TCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACT 451318 || |||||||||||||| ||||| |||||||| || || | || || || ||| Sbjct 11869 TCGATGGTTCTTACTAAGATGAAGGAAACAGCTGATGGATTCCTCGGCAAGCCTGTGACT 11928 Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 | || || | ||||| || ||||| || ||||| | || || ||||| || |||||| Sbjct 11929 CAAGCTGTCGTGACTGTGCCTGCTTACTTTAATGACTCCCAGCGTCAAGCTACAAAAGAT 11988 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || | |||||||| || | || ||||| ||||| || ||||| ||||| ||||| Sbjct 11989 GCTGGTAAGATTGCTGGATTGGACGTGCTTCGTATTATCAACGAACCCACAGCTGCTGCG 12048 Query 451439 CTAGCATATGG 451449 || || || || Sbjct 12049 CTGGCTTACGG 12059 >seq13295 Length=8269 Score = 96.9 bits (106), Expect = 1e-14 Identities = 244/367 (66%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 || |||||||||||||||||| | ||||||||| || ||||| | | || ||| | Sbjct 5192 TTCGCTCCTGAAGAAATTTCAGCCATGGTTCTTGGCAAGATGAAGCAGATTGCTGAAGGA 5251 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 || |||| | | | || || || | || || || || || ||||||||||| Sbjct 5252 TACGTTGGCCGCGAAATCAAGGACGCTGTCGTGACGGTACCTGCGTACTTCAATGATGCT 5311 Query 451358 CAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTAT 451416 || || ||||| || |||||||| || ||| |||||||| || | ||| | || || || Sbjct 5312 CAGCGTCAAGCTACAAAAGATGCCGGTACA-ATTGCTGGCTTGACTGTCCAACGTATCAT 5370 Query 451417 TAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACA-GAAG 451475 || || || || || || || | || |||||| | | || | ||| || | | Sbjct 5371 CAACGAGCCGACTGCTGCAGCCATTGCTTATGGAATTG----ATAAGAAGTCGCAGGGCG 5426 Query 451476 aaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAA 451535 | || || | || || || || | || || || ||| |||| | | || | | Sbjct 5427 AGAAGAACGTCTTGGTCTTCGACCTCGGCGGTGGTACTTTTGATGTGACGTTGCTAGCCA 5486 Query 451536 TTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAG 451595 |||| | ||| || |||||||| || || || ||||| ||||| | || ||||| | Sbjct 5487 TTGACGGTGGAGTGTTTGAAGTGCTCGCTACGAACGGTGACACTCACTTGGGCGGTGAGG 5546 Query 451596 ATATTGA 451602 | |||| Sbjct 5547 ACTTTGA 5553 >seq7621 Length=28263 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| ||||| || || || ||||||||||| || |||| || || || ||||| || | Sbjct 22316 ATGCCGTAATCACGGTACCAGCTTATTTCAACGACTCACAGCGTCAGGCCACTAAGGACG 22257 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| |||||||| | ||||| || || || |||||||||||||| || || ||| Sbjct 22256 CAGGTGCCATTGCTGGGCTGAATGTGCTGCGTATCATTAATGAACCTACGGCTGCCGCTA 22197 Query 451440 TAGCATATGGA 451450 | || |||||| Sbjct 22196 TTGCCTATGGA 22186 Score = 96.9 bits (106), Expect = 1e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 451320 ATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATG 451379 |||| ||||| || || || ||||||||||| || |||| || || || ||||| || | Sbjct 25766 ATGCCGTAATCACGGTACCGGCTTATTTCAACGACTCACAGCGTCAGGCCACTAAGGACG 25825 Query 451380 CAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTC 451439 |||| |||||||| | ||||| || || || |||||||||||||| || || ||| Sbjct 25826 CAGGTGCCATTGCTGGGCTGAATGTGCTGCGTATCATTAATGAACCTACGGCTGCCGCTA 25885 Query 451440 TAGCATATGGA 451450 | || |||||| Sbjct 25886 TTGCCTATGGA 25896 >seq13324 Length=6237 Score = 86.0 bits (94), Expect = 2e-11 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || ||||||||||| || || || || || || ||||| || | || Sbjct 5902 AATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTC 5961 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||||| | || ||| |||||||| |||||||| ||||| || || || Sbjct 5962 CGACACGATTGACAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCA 6021 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| |||| || | || || ||||| || || || | || | || ||||| || Sbjct 6022 GCAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATTACAA 6081 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || || || || Sbjct 6082 CATCCAGAAGGAGTCGACGCTGCATTTGGT 6111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975040342088888