Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq24131 150 2e-31 seq15263 143 3e-29 >seq24131 Length=32940 Score = 150 bits (166), Expect = 2e-31 Identities = 206/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| || | |||||||||||||| | ||||| || || ||||| |||||| || Sbjct 30713 CTCATTGATACGTATATTAAGGATGTTATGGAGAAAAACCACCTCTTACGTGCCATCGAA 30772 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 102166 || || ||||| | |||||||||| | ||||| |||| |||| |||| | || Sbjct 30773 ACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGAAATGGTGTGATCCGCGTGTA 30832 Query 102167 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || || | || ||||| || || |||||||| | ||||| || || || ||||| || Sbjct 30833 TCG-TCGTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAAGGCATTTTTTTCTCAGG 30891 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 ||| || || | || | ||||||||| ||||| || |||||||| || || | ||||| Sbjct 30892 TTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATGCCTGGACTGAGTTTCTC 30951 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || ||| | ||| ||||||||| || | ||| ||| ||||| Sbjct 30952 GAATGAGTTAATCAGTCGTGACGAAGGTATGCACACAGACTTTGC 30996 >seq15263 Length=38747 Score = 143 bits (158), Expect = 3e-29 Identities = 855/1357 (63%), Gaps = 34/1357 (3%) Strand=Plus/Minus Query 111710 CCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTT 111769 |||||| || ||||| | || ||||| || ||||| | |||||| ||||| ||||| Sbjct 35314 CCACGCGACGCCAACGTTATTTAACGCGGGGACACCCCGGCCCCAATTGTCCTCGTGTTT 35255 Query 111770 CCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGC 111829 || | |||| | || ||||| || | || ||||||| || || | ||||||| Sbjct 35254 TCTATTAGCAATGCAAGATGATTCGATTGAAGGGATTTACGATACGCTTAAACAATGTGC 35195 Query 111830 CCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAA 111889 | ||||| || ||||| || || || ||||| || ||| | | |||| | ||| Sbjct 35194 CTGTATCTCTAAATGGGCCGGAGGGATAGGGATCAGTATGCATAACATTCGAGCAACCAA 35135 Query 111890 GTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATT 111949 | ||| | || || || || || |||| || ||||| ||| | ||||| || Sbjct 35134 CAGTTACATTCGGGGCACCAACGGCTCCTCGAATGGGATCATTCCCATGTTGCGCGTCTT 35075 Query 111950 TAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGT 112006 ||| | || || || ||||| | |||| || | ||||| || || | || | Sbjct 35074 TAATGATACGGCACGGTATGTGGATCAAGGCGGCGGGAAACGCAAAGGCTCGTTTGCCAT 35015 Query 112007 CTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGG 112066 ||| | ||||| ||||| || || | | ||||| | || || || ||||| || Sbjct 35014 CTACTTGGAGCCGTGGCATGCCGACGTGCTCGAGTTTTTGGACTTACGGAAAAACCACGG 34955 Query 112067 TGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCAT 112126 | ||| ||| || ||| | || | || | |||||||| ||| | || || Sbjct 34954 CAACGAGTTACATCGGGCACGTGATTTGTTTTATGCCTTGTGGATTCCTGATTTGTTTAT 34895 Query 112127 GAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCT 112186 |||| | || || | | ||| | ||| | | || ||||| || | || |||||| | Sbjct 34894 GAAGCGCGTAGAAGCCAATGGAGAGTGGAGTTTATTCTGTCCGAACGAAGCGCCCGGTTT 34835 Query 112187 CTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTC 112245 | ||| ||| | ||| | ||||||||| | | ||| || ||||||| | || | | Sbjct 34834 GTACGAATGCTG-GGGCGCCGAGTTTGAAAACTTGTACGCACAGTACGAACACGATGGAC 34776 Query 112246 GGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCG 112305 | ||| ||| || ||| | ||||| || || | | | || | | Sbjct 34775 GCGCGCGGAAGACCATGAAAGCCCAACAATTGTGGTTTGCCATCTTGGACGCCCAGATTG 34716 Query 112306 AGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 112365 |||| || || | ||||| ||||| ||||| || | ||| |||||| ||| Sbjct 34715 AGACGGGCGTGCCGTTCATGCTGTACAAGGACGCGGCGAATCGCAAGTCGAATCAACAGA 34656 Query 112366 ATTTGGGTGTGAT-CAA--GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACA 112422 || | || ||| | | |||| ||| | || ||| | | || | || Sbjct 34655 ATCTCGGCACGATTCGATCGAGT---AACTTGTGCTGTGAAGTGATTGAGTACACGTCGC 34599 Query 112423 AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAG 112482 ||||| ||| ||||||||||||||||| | || | || || | |||||| Sbjct 34598 CCGATGAAGTGGCCGTGTGTAACCTCGCATCGGTGGCGTTACCGAAATTTGTGGAC---- 34543 Query 112483 AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACC 112542 ||| | | || ||| | ||||| | |||| || || ||| || || ||||| Sbjct 34542 -GACCGTG-CGTTCAATTTTCAAAAATTGTACGACGTGACCAAAGTCGTGACGCGAAACC 34485 Query 112543 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 |||||| || |||||| |||| ||||||||| || || |||| || |||||| Sbjct 34484 TAAACAAGGTGATTGATGTCAATTATTACCCCGTAAAGGAAGCACGTACGTCCAATATGC 34425 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662 | || ||||| ||||| |||| ||||| || || || |||| || || || Sbjct 34424 GGCATCGTCCGATTGGGATCGGGGTCCAGGGCCTTGCCGATGCGTTTATCCTCATGAATT 34365 Query 112663 ACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATC 112722 | ||||||| |||||||||| |||| | || | || ||||| || || ||| Sbjct 34364 ATCCATTTGAGAGCGACGAAGCGCGGGAATTGAACAAGAAGATCTTTGAAACCATCTATT 34305 Query 112723 ACGCCGCTCTTGAGGCGAGTTCGGAG-TTGGCAGAG-GTTGATGGTCCATATGAAACCTT 112780 || || | ||| || |||| ||| || || || || || || || || || Sbjct 34304 TTGCTGCCATGGAGACGTCGATGGAGATTGCCAAAGAACTG--GGACCGTACGAGACGTT 34247 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGAC--- 112837 || || || || || ||||| | | || |||||| |||||| |||| || Sbjct 34246 TGCAGGCTCCCCTGCGAGTAAAGGGATCTTCCAGTTTGATTTGTGGG-GCGTGACACCGT 34188 Query 112838 ---CAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 || |||| | || ||| || | | ||||||| | | || | || |||| Sbjct 34187 CCTCAGGCTT--GTGGGATTGGAACACATTGAAGGAACAGGTGATCAAGTACGGGATTCG 34130 Query 112895 TAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 ||| || || | |||| || ||||||||||| || || || || || | || || Sbjct 34129 CAAC--TCGTTGCTCGTGGCGCCCATGCCAACAGCTTCGACGGCGCAGATTCTTGGCAAC 34072 Query 112953 AATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAG 113012 ||||||| ||||||| || ||| | || || || | | | | || || ||| Sbjct 34071 AATGAATCGATTGAACCGTATACGTCCAATATGTACAATCGGCGCGTCTTGGCCGGCGAG 34012 Query 113013 TTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCA 113049 ||| |||||| ||||| || | || |||| |||| Sbjct 34011 TTTACGATTGTGAACAAATATTTGATGAATGAGCTCA 33975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620534559925920