Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2611 102 9e-17 >seq2611 Length=58161 Score = 102 bits (112), Expect = 9e-17 Identities = 315/476 (66%), Gaps = 26/476 (5%) Strand=Plus/Plus Query 154645 CACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACCATCAAGGATCA---GGAG 154701 ||||||||||||| || || ||||| | || | ||| || |||| | ||| || Sbjct 5298 CACAGGGTGAGTACGCCGGTCTGTTGACGATTC--GCA-ACTATCAGCGGTCAATTGGCC 5354 Query 154702 ATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTG 154761 | | | | || || ||| | || |||| ||| || || || || |||||||| |||| Sbjct 5355 AAGGACACCGTAACGTGTGTCTCATCCCAGTGTCTGCCCACGGTACGAATCCTGCGAGTG 5414 Query 154762 CTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACA 154821 |||| ||||| || ||||||||||| | ||| |||| |||||| |||||||| | || Sbjct 5415 CTGTAATGGCGGGCATGAAAGTTGTGGTTGTAAAGTCTGATGAAAATGGTAACGTGGATC 5474 Query 154822 TCAAAGATCT---AGAGAAGAAAGCA-ATCATGAATACATTTGAACTGTCATGTATTATG 154877 | || | | ||| ||| | || ||| | || || | | ||| Sbjct 5475 GGGAGGACTTGGCTGCTAAGGCGGCAGAGCACTCGGACAATCTAAGTGCC----TTCATG 5530 Query 154878 ATTACATACCCATCTACACATGGTGTATTTGAAAC---TAACATTAGACAGATATGTAAG 154934 || || || || || ||| ||||||||||||| | || || || || ||| | Sbjct 5531 ATCACTTATCCTTCCACATTTGGTGTATTTGAACCCGGTATCA--AG---GACATGATGG 5585 Query 154935 A--TCGTTCA-TGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAG 154991 | | |||| | || | || | |||||| || | ||||| || ||| | ||||| ||| Sbjct 5586 ACCTTATTCACTCAC-ACGGAGCTCAGGTCTACATGGATGGCGCCAATATGAATGCTCAG 5644 Query 154992 GTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAA 155051 || | || | || ||| | ||||| || || || ||||| ||| | || || Sbjct 5645 GTGGCGCTCTGCCACCCGGGTGGGATCGGTGCTGACGTGTGCCATCTGAACCTTCACAAG 5704 Query 155052 ACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGC 155107 || ||||| ||||| || || ||||| || ||||| || ||| | || ||||| || Sbjct 5705 ACTTTCTGCATTCCTCACGGTGGTGGTGGCCCTGGTGTTGGTTCCATCGGTGTGGC 5760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579018865074240