Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15263 86.0 7e-12 >seq15263 Length=38747 Score = 86.0 bits (94), Expect = 7e-12 Identities = 222/337 (66%), Gaps = 1/337 (0%) Strand=Plus/Plus Query 48286 TAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACAC 48345 ||||| ||| ||| || | | || |||||||| || || || || || || | | Sbjct 34969 TAAGTCCAA-AAACTCGAGCACGTCGGCATGCCACGGCTCCAAGTAGATGGCAAACGAGC 35027 Query 48346 CTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACA 48405 || ||||| || |||||||| | ||| | || |||| ||| | || | |||| Sbjct 35028 CTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGTATCATTAAAGACGCGCAACA 35087 Query 48406 TTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTA 48465 | || | || ||||| || || ||||| ||| ||| ||||| | |||| | Sbjct 35088 TGGGAATGATCCCATTCGAGGAGCCGTTGGTGCCCCGAATGTAACTGTTGGTTGCTCGAA 35147 Query 48466 TATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAA 48525 | ||| || || ||||| || || ||| |||||| || ||||| |||||| Sbjct 35148 TGTTATGCATACTGATCCCTATCCCTCCGGCCCATTTAGAGATACAGGCACATTGTTTAA 35207 Query 48526 GGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACA 48585 | ||||| ||||| ||||| || ||||||| ||| |||||||||||| |||| Sbjct 35208 GCGTATCGTAAATCCCTTCAATCGAATCATCTTGCATTGCTAATAGAAAACACGAGGACA 35267 Query 48586 TTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGG 48622 ||| || | || || | |||||||| ||||| Sbjct 35268 ATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGG 35304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561920591921040