Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1281 129 5e-24 seq7621 120 2e-21 seq10947 113 4e-19 seq1489 111 1e-18 seq13295 100 2e-15 >seq1281 Length=23765 Score = 129 bits (142), Expect = 5e-24 Identities = 343/514 (67%), Gaps = 19/514 (4%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 || || || || ||||| |||| ||||| ||||| || || || || |||||| | Sbjct 6015 TGCGTCGGCGTGTGGCAGAATGACCGCGTTGAGATTATCGCAAACGACCAGGGTAACCGC 6074 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || || ||||| ||| |||||||||| ||||||| | | | |||||||| || || Sbjct 6075 ACGACCCCTTCTTACGTTGCTTTCACGGACACTGAACGTCTGATCGGTGATGCCGCCAAG 6134 Query 550145 TATCAAGC--CACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 | || | || || || | ||||||| | ||||| || || ||| | ||||| Sbjct 6135 AACCAGGTAGCAATG--AACGCCCCCAATACGGTGTTTGACGCCAAGCGTCTCATTGGTC 6192 Query 550203 G-AAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT 550261 | ||||| | || | | ||| || || || || ||||| ||||||||| | | | Sbjct 6193 GCAAGTTCTCG-GACCCAATTGTCCAAGCTGACATTAAGCACTGGCCTTTCAAGGTCACT 6251 Query 550262 AATGTTTCTG--GAAAA-CCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAAT-- 550316 || ||| || || ||| | || || | | | |||| | |||| | Sbjct 6252 GCTGGCCCTGCCGACAAGCCTCAGAT-GATTGTGCAATTCAAGG----GCGAAACCAAAA 6306 Query 550317 --TTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTG 550373 || || || || | ||||| || ||||| |||| || ||| || || | Sbjct 6307 CGTTCCAGCCCGAGGAGATTTCGTCGATGGTGCTAATCAAGATGCGTGAAGTGGCTGAAG 6366 Query 550374 CTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACT 550433 | || ||||| | || || | | |||| || || || || ||||| ||||| || |||| Sbjct 6367 CCTTCATTGGTAAGGAGGTGAAGAATGCTGTCATCACGGTCCCAGCTTATTTCAACGACT 6426 Query 550434 CACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTA 550493 | ||||| || || ||||| || ||||| ||||||||||| || ||||| ||||| | Sbjct 6427 CGCAACGCCAGGCCACTAAGGACGCTGGTGCCATTGCTGGACTCAACGTTCTCCGTATCA 6486 Query 550494 TCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| ||||| || || || || |||| || || Sbjct 6487 TCAACGAACCCACGGCCGCCGCTATTGCCTACGG 6520 >seq7621 Length=28263 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 ||||| | | |||| ||||| || |||||||| ||||| || |||||||| ||||| || Sbjct 22326 GAAGTGAAGAATGCCGTAATCACGGTACCAGCTTATTTCAACGACTCACAGCGTCAGGCC 22267 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 ||||| || || || |||||||| || ||||| || ||||| || ||||||||||| Sbjct 22266 ACTAAGGACGCAGGTGCCATTGCTGGGCTGAATGTGCTGCGTATCATTAATGAACCTACG 22207 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| || |||| |||||| | || || Sbjct 22206 GCTGCCGCTATTGCCTATGGATTGGACAA 22178 Score = 116 bits (128), Expect = 3e-20 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 ||||| | | |||| ||||| || ||||| || ||||| || |||||||| ||||| || Sbjct 25756 GAAGTGAAGAATGCCGTAATCACGGTACCGGCTTATTTCAACGACTCACAGCGTCAGGCC 25815 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACT 550507 ||||| || || || |||||||| || ||||| || ||||| || ||||||||||| Sbjct 25816 ACTAAGGACGCAGGTGCCATTGCTGGGCTGAATGTGCTGCGTATCATTAATGAACCTACG 25875 Query 550508 GCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| || |||| |||||| | || || Sbjct 25876 GCTGCCGCTATTGCCTATGGATTGGACAA 25904 >seq10947 Length=55706 Score = 113 bits (124), Expect = 4e-19 Identities = 321/488 (66%), Gaps = 9/488 (2%) Strand=Plus/Plus Query 552109 AAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGT 552168 |||| |||| ||||| | || || || || || |||||||| ||| ||| | ||| Sbjct 45926 AAGTGAATGAGATTGTCTTGGTGGGCGGCTCGACTAGAATTCCGAAAGTTCAGCAGTTGT 45985 Query 552169 TAA-GTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTG 552225 | | | ||| ||||||||| ||| ||||| | |||| |||| || || || |||| Sbjct 45986 TGATGGACTT-TTTCAATGGGAAAGAATTA--TTCAAGTCGATTAACCCGGACGAAGCTG 46042 Query 552226 TTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT---TTCTGGACAAACTGATGAAAAAC 552282 | ||||| || || | | ||||| || ||| | | |||| |||| || Sbjct 46043 TAGCCTACGGCGCAACTGTCCAAGCGGCCATTTTAAGTGGTGGAGAAACGTCCTCTAAGT 46102 Query 552283 TACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAG 552342 ||||| || | | || | ||||| | || | || || || || ||||| | || | Sbjct 46103 TACAAGATTTGTTGCTGTTGGATGTCGCGCCGTTGTCGCTCGGATTGGAAACGGCAGGTG 46162 Query 552343 GTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTAT 552402 | | ||||| || ||||| | ||||| || | || || || || | || Sbjct 46163 GAGTCATGACGAAGCTTATTCCACGGAATACGACGGTGCCAACGAAGAAGTCGCAGTCAT 46222 Query 552403 TTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAA 552462 |||| |||||| | ||||| ||| | | || |||||| | ||||| || || | | Sbjct 46223 TTTCGACGTATGCCGATAACCAACCAGGCGTCTTGATTCAAGTGTTTGAGGGCGAGCGTA 46282 Query 552463 AATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTC 552522 | ||| |||||| ||| ||||| | |||| | | || || || || || | Sbjct 46283 CGATGACTCGTGATAATCATCTCCTTGGGAAGTTTAGTCTTGATGGGATCCCACCCATGC 46342 Query 552523 CTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATG 552582 | || || || || ||||| || ||||| || ||||||||||||||||| || |||||| Sbjct 46343 CACGGGGTGTTCCTCAAATCGATGTTACCTTTGATATCGATGCCAATGGCATACTGAATG 46402 Query 552583 TGACTGCT 552590 | ||||| Sbjct 46403 TATCTGCT 46410 Score = 109 bits (120), Expect = 4e-18 Identities = 338/518 (65%), Gaps = 9/518 (2%) Strand=Plus/Plus Query 550025 TGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGA 550084 ||||||||||| ||||| || | | || || || ||||||||||||||||| ||| | Sbjct 41821 TGTGTTGGTGTGTGGCAGAACGATCGTGTGGAGATCATTGCCAATGATCAAGGAAACCGC 41880 Query 550085 ACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAA 550144 || || ||||| ||||| | || || || || || | | || |||||||||| || || Sbjct 41881 ACGACACCATCGTATGTGGCATTTACTGATACCGAGCGTCTAATTGGTGATGCGGCGAAG 41940 Query 550145 TATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 |||||| | ||| | ||| || | ||||| | || ||||| || ||| | Sbjct 41941 AATCAAGTGGCGATGAATGCCCACAACACAGTGTTTGACGTGAAGCGTTTGATCGGACGC 42000 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAAT 550264 | || | || | || || | ||||| || || ||||| || || | | | | Sbjct 42001 AAGTTCACAGACCCCGAAGTGCAATCGGATATCAAACACTGGCCATTTAAAGTGATCAGT 42060 Query 550265 GTTTCTGGA---AAACCTTA--TATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTT 550319 | ||| | |||||| | | || || | | | ||| ||| | || Sbjct 42061 GGCCCTGAAAACAAACCTCAAGTGGTGGTGCAATT--TCGAGGCGAAACGAAA-ACGTTC 42117 Query 550320 CA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTT 550378 || || ||| |||||||||| ||||| || | || ||| | | | ||| || | | Sbjct 42118 CAGCCGGAAGAAATTTCATCCATGGTGTTGACCAAGATGCGAGATATTGCCGAAGCGTAT 42177 Query 550379 GTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| | |||| | | ||||||| | || || || || ||||| ||||| || || Sbjct 42178 ATTGGAAAGCAAGTGAAGAATGCAGTGGTGACAGTCCCTGCCTATTTCAATGATTCGCAG 42237 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 ||||| || || |||||||| ||| ||||| || | ||||| | || ||||| || Sbjct 42238 CGTCAGGCCACGAAAGATGCAGGAGTGATTGCAGGGTTAAATGTATTGCGGATTATTAAC 42297 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || || || || | || || || || || || Sbjct 42298 GAGCCGACGGCGGCAGCGATCGCGTACGGGCTGGACAA 42335 Score = 96.9 bits (106), Expect = 3e-14 Identities = 274/417 (66%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 552179 TTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGT 552236 ||||||||| ||| ||||| | |||| |||| || || || ||||| ||||| || Sbjct 42542 TTTCAATGGGAAAGAATTA--TTCAAGTCGATTAACCCGGACGAAGCTGTAGCCTACGGC 42599 Query 552237 GCCGCAATTCAAGCAGCTATTCT---TTCTGGACAAACTGATGAAAAACTACAAAATATT 552293 || | | ||||| || ||| | | |||| |||| || ||||| || | Sbjct 42600 GCAACTGTCCAAGCGGCCATTTTAAGTGGTGGAGAAACGTCCTCTAAGTTACAAGATTTG 42659 Query 552294 GTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACT 552353 | || | ||||| | ||| | || || || || ||||| | || || | ||||| Sbjct 42660 TTGCTGTTGGATGTCGCGCCT-TGTCGCTCGGATTGGAAACGGCAGGTGGAGTCATGACG 42718 Query 552354 AATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTAT 552413 || ||||| | ||||| || | || || || || | |||||| |||||| Sbjct 42719 AAGCTTATTCCACGGAATACGACGGTGCCAACGAAGAAGTCGCAGTCATTTTCGACGTAT 42778 Query 552414 TCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAA 552473 | ||||| ||| | | || |||||| | ||||| || || | | | ||| Sbjct 42779 GCCGATAACCAACCAGGCGTCTTGATTCAAGTGTTTGAGGGCGAGCGTACGATGACTCGT 42838 Query 552474 GATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTA 552533 |||||| ||| ||||| | |||| | | || || || || || || || || || Sbjct 42839 GATAATCATCTCCTTGGGAAGTTTAGTCTTGATGGGATCCCACCCATGCCACGGGGTGTT 42898 Query 552534 CCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || ||||| || ||||| || ||||||||||||||||| || ||||||| ||||| Sbjct 42899 CCTCAAATCGATGTTACCTTTGATATCGATGCCAATGGCATACTGAATGTATCTGCT 42955 >seq1489 Length=35436 Score = 111 bits (122), Expect = 1e-18 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || ||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 11941 ACTGTGCCTGCTTACTTTAATGACTCCCAGCGTCAAGCTACAAAAGATGCTGGTAAGATT 12000 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||||| | | || |||||||||||||| ||||| || |||||||| || || || || Sbjct 12001 GCTGGATTGGACGTGCTTCGTATTATCAACGAACCCACAGCTGCTGCGCTGGCTTACGG 12059 >seq13295 Length=8269 Score = 100 bits (110), Expect = 2e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTT 550381 || ||| |||||||| | |||||| | || ||||| || | || | | ||| Sbjct 5198 CCTGAAGAAATTTCAGCCATGGTTCTTGGCAAGATGAAGCAGATTGCTGAAGGATACGTT 5257 Query 550382 GGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGT 550441 || | ||| | | ||| || || | || ||||| || || || ||||| | || ||| Sbjct 5258 GGCCGCGAAATCAAGGACGCTGTCGTGACGGTACCTGCGTACTTCAATGATGCTCAGCGT 5317 Query 550442 CAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAA 550501 |||||||| |||||||| || |||||||| | | ||| | ||||| ||||| || Sbjct 5318 CAAGCTACAAAAGATGCCGGTACAATTGCTGGCTTGACTGTCCAACGTATCATCAACGAG 5377 Query 550502 CCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || |||||||| || |||| |||||| ||||||| Sbjct 5378 CCGACTGCTGCAGCCATTGCTTATGGAATTGATAA 5412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027879435515140