Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq24131 185 1e-41 >seq24131 Length=32940 Score = 185 bits (204), Expect = 1e-41 Identities = 318/460 (69%), Gaps = 4/460 (1%) Strand=Plus/Minus Query 37175 ACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAA 37234 ||||||||| || || | |||||| || | ||| || || ||||| || || | | Sbjct 31000 ACATGCAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAG 30941 Query 37235 TCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAA 37294 ||| ||||| | || | ||||| | |||||| || | |||||| || || || || Sbjct 30940 TCCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAA 30881 Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGA 37354 ||| |||||||||| |||||||||| || || || | | || || | | || Sbjct 30880 AATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGACGA--TACACGCGGA 30823 Query 37355 --AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 | |||||| || ||| | || || ||| |||||| ||| ||||| || || Sbjct 30822 TCACACCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCA 30763 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 |||||| |||||| || | ||| | ||||| |||||||| || | || Sbjct 30762 CGTAAGAGGTGGTTTTTCTCCATAACATCCTTAATATACGTATCAATGAGCAGCGAGTAA 30703 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 | ||| ||||||||||| ||||| || ||||| || || ||||| || | |||||||| | Sbjct 30702 ACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGT 30643 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | |||||| ||||| || || | || | ||| ||||| || || ||||| || ||| Sbjct 30642 ATTTGAACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCATTCACAATGCCATCGCTCGCT 30583 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT 37632 |||||||| ||||| |||| ||| ||||| || | |||| Sbjct 30582 GCAAAGAAGGCAAGTACATGTTTGATAAAGTGACGCTCAT 30543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592118477527440