Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13324 111 1e-19 >seq13324 Length=6237 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||||||| ||||| ||| || || || |||||||||| || | || Sbjct 6120 AGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGC 6061 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || ||||| || || ||||| || || | |||| || ||| Sbjct 6060 CCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCC 6001 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || || | | | || |||| |||||| || | ||| Sbjct 6000 TTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTG 5941 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || ||||||| ||||| |||||||||||||| || Sbjct 5940 ATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATTGT 5900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380813241253878