Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq24131 152 1e-31 >seq24131 Length=32940 Score = 152 bits (168), Expect = 1e-31 Identities = 367/551 (67%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| |||||| |||||||| || ||||| | | | || ||||| | || Sbjct 30999 CATGCAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGT 30940 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| ||| | || ||||||||| || || | ||||| || ||||| || Sbjct 30939 CCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAA 30880 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTT---CTTGTCT 48307 ||||| || |||| || || || || | ||| || | || || | | | | Sbjct 30879 ATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGA--CGATACACGCGGAT 30822 Query 48308 GAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCC 48367 | | ||| || ||||||| || ||||| |||| |||| || || || ||||| Sbjct 30821 CACA-CCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCA 30763 Query 48368 CGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAG---TGAGCAGCTTTGCG 48424 || ||||| | || ||| | ||| || ||| ||| |||||||| | | Sbjct 30762 CGTAAGAGGTGGTTTTTCTCCATAACATCCTTAATATACGTATCAATGAGCAGC---GAG 30706 Query 48425 TACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCA 48484 || | || ||||| | |||||| || || |||||||| ||||| ||| | || ||| Sbjct 30705 TAAACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAGCTTCA 30646 Query 48485 AACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAA 48544 | || ||||| || ||| || ||| |||||||| || || ||||| Sbjct 30645 GGTATTTGAACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCATTCACAATGCCATCGCTC 30586 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTC 48604 || |||||||||||||| |||||||| | || || ||||| |||| || ||| | Sbjct 30585 GCTGCAAAGAAGGCAAGTACATGTTTGATAAAGTGACGCTCATTGTCCGTAAGATTCACC 30526 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| ||| | ||| | ||| |||| || || | |||||||| || || ||| Sbjct 30525 CAGTCCTTAAGGTCATGTACCAAATCCAACTCCTCGGCCGTCCAGAACGAAGCCTCAGCT 30466 Query 48665 TTTTTGTACAT 48675 || |||||||| Sbjct 30465 TTCTTGTACAT 30455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931220899530240