Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq10947 158 8e-33 seq13295 107 1e-17 seq7621 95.1 8e-14 seq7452 86.0 4e-11 seq5065 86.0 4e-11 >seq10947 Length=55706 Score = 158 bits (174), Expect = 8e-33 Identities = 368/548 (67%), Gaps = 9/548 (2%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || |||||| | || || || | | ||||| | ||| ||||| || | | || || Sbjct 41794 GGAATTGATCTGGGTACGACGTGCTCGTGTGTTGGTGTGTGGCAGAACGATCGTGTGGAG 41853 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || ||||||||||| ||||| || | || |||||||| ||||| | |||||||| || Sbjct 41854 ATCATTGCCAATGATCAAGGAAACCGCACGACACCATCGTATGTGGCATTTACTGATACC 41913 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | ||| ||||| ||||| || || |||||| || ||| | || || | Sbjct 41914 GAGCGTCTAATTGGTGATGCGGCGAAGAATCAAGTGGCGATGAATGCCCACAACACAGTG 41973 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 ||||| | || | ||||| || || || || || || || ||||| ||||| Sbjct 41974 TTTGACGTGAAGCGTTTGATCGGACGCAAGTTCACAGACCCCGAAGTGCAATCGGATATC 42033 Query 474575 CGTCATTGGCCTTTTAAGGTGATAAATG---TTGGTGGTAAAC--CATATATAGAAGCAA 474629 || ||||| ||||| ||||| | || || |||| || | | |||| Sbjct 42034 AAACACTGGCCATTTAAAGTGATCAGTGGCCCTGAAAACAAACCTCAAGTGGTGGTGCAA 42093 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTTTTAGCC 474688 | || ||| ||||| ||| | || || |||||| ||||||| || ||||| || || Sbjct 42094 T-TTCG-AGGCGAAACGAAA-ACGTTCCAGCCGGAAGAAATTTCATCCATGGTGTTGACC 42150 Query 474689 AAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 || ||| | | | || | ||| ||||| | |||| | ||||||| | || Sbjct 42151 AAGATGCGAGATATTGCCGAAGCGTATATTGGAAAGCAAGTGAAGAATGCAGTGGTGACA 42210 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || ||||| |||||||| || ||||| || || |||||||| ||| |||||| Sbjct 42211 GTCCCTGCCTATTTCAATGATTCGCAGCGTCAGGCCACGAAAGATGCAGGAGTGATTGCA 42270 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || | ||||| || || |||||||| || || || || || || | || || || || Sbjct 42271 GGGTTAAATGTATTGCGGATTATTAACGAGCCGACGGCGGCAGCGATCGCGTACGGGCTG 42330 Query 474869 GATAAGAA 474876 || ||||| Sbjct 42331 GACAAGAA 42338 >seq13295 Length=8269 Score = 107 bits (118), Expect = 1e-17 Identities = 326/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 475681 TGACAAA-TCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAA 475739 ||| ||| ||| || ||||||||||||| || || || || || || | ||||| ||| Sbjct 5829 TGAAAAAGTCAGAAATCCATGAAATTGTGCTAGTTGGTGGCTCTACGCGTATTCCCAAAG 5888 Query 475740 TAAGAGAAATGCTTTCATCAT-ATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCT 475798 | | | | | || | || |||| || || || || | |||| || || Sbjct 5889 TCCAACAGCT-CATTAAGGATTATTTCAACGGCAAGGAGCCATCGCGTGGTGTGAACCCG 5947 Query 475799 GATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGAC 475858 |||||||||||||| || || ||||||||||||| || ||| | ||| || ||| Sbjct 5948 GATGAAGCTGTTGCTTACGGTGCTGCTGTCCAAGGAGGCATTCTCAGTGGTGAA-CAG-- 6004 Query 475859 GAGAAACTAAATAATATTGTACTTGTT---GACGTAACTCCACTTTCATTAGGTCTTGAA 475915 || | | | || ||| ||| | || || || ||||| |||| ||||| Sbjct 6005 GATGACTTGACCAAGGATGTGCTTTTGATCGATGTTGTGCCTCTTTCCCAAGGTATTGAA 6064 Query 475916 ACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAA 475975 || |||||||| | ||||| || || || || | || ||| |||||| ||| ||| Sbjct 6065 ACTGTTGGAGGTGTCATGACCAAGCTGATCAACCGCAACACTGTTATCCCGACCAAGAAA 6124 Query 475976 TCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAA 476035 || | ||||| ||||| || || || | |||| |||||| |||| || Sbjct 6125 TCGCAGACCTTTTCGACTTACCAGGACAACCAGCCTGCTGTGCTCATCCAGGTCTTCGAG 6184 Query 476036 GGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATT 476095 || || | | ||||| || || ||||||| ||| | || || | Sbjct 6185 GGAGAGCGTCCCATGACTAAGGACAACCGTCTGCTTGGAAAGTTTGAACTGACTGGCTTG 6244 Query 476096 CCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGT 476155 || ||||| || |||||||||||||||||||||| || || || ||||| || || ||| Sbjct 6245 CCCCCTGCCCCACGAGGAGTTCCTCAAATTGAAGTGACGTTCGAGATTGACGCTAACGGT 6304 Query 476156 ATTCTTAATGTTACTGC 476172 |||||| | || |||| Sbjct 6305 ATTCTTCAGGTGTCTGC 6321 >seq7621 Length=28263 Score = 95.1 bits (104), Expect = 8e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| ||||| || || ||||| ||||| || || || || ||||| || ||||| || | Sbjct 22316 ATGCCGTAATCACGGTACCAGCTTATTTCAACGACTCACAGCGTCAGGCCACTAAGGACG 22257 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||| || || ||||| | ||||| ||||||||||| || || ||||| Sbjct 22256 CAGGTGCCATTGCTGGGCTGAATGTGCTGCGTATCATTAATGAACCTACGGCTGCCGCTA 22197 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| | || ||||| Sbjct 22196 TTGCCTATGGATTGGACAAGAA 22175 Score = 91.5 bits (100), Expect = 1e-12 Identities = 362/559 (65%), Gaps = 27/559 (5%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| ||||| | || || || ||| || || | || ||||| |||| || | Sbjct 25361 TTGGCATTGACCTCGGCACCACCTACTCGTGCGTCGGCGTGTGGCAGAATGACCGCGTCG 25420 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || || || ||||| ||||| | || ||||| || ||||| ||||||| || | Sbjct 25421 AGATCATCGCTAACGACCAGGGTAACCGTACGACACCTTCGTATGTGGCTTTTACGGACA 25480 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGC-ATCTAATCCTGTTAATACT 474511 | |||| ||| || || |||||||| || | || | || || | || | ||||| Sbjct 25481 CCGAACGTCTGATCGGTGATGCTGCCAAGAACCAGGTGGCTATGAACGCCCGC-AATACG 25539 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || || || || | | |||||||| || || || || ||||||| | || Sbjct 25540 GTGTTCGACGCCAAGCGCCTCATTGGTCGCAAATTCTCGGACCCCGTTGTCCAAGCCGAC 25599 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGA-TAAATGTT--GGTGGTAAACCATATATA--GAAG 474626 || || ||||| || ||| | | | | | || || || | || | | Sbjct 25600 ATTGCACACTGGCCGTTCTTGGTCACTGCAGGCCCCGCTGACAAGCCCCAGATCACGGTG 25659 Query 474627 CAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTTTTA 474685 |||| || ||| ||||| || | || || || || |||| ||||| ||||| || Sbjct 25660 CAATTCAA--AGGCGAAACGAAG-ACGTTCCAGCCCGAGGAAATCTCTTCGATGGTGCTA 25716 Query 474686 GCCAAAATGAAACAAACCGCGAGCT--CATA-----TCTTGGACAAG-AAGTAACTGATG 474737 ||| ||| |||||| | | | || | | |||| |||| | ||| Sbjct 25717 ATCAAGATG--------CGCGAGGTGGCTGAAGCGTTCATCGGCAAGGAAGTGAAGAATG 25768 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 | ||||| || || || || ||||| || || || || ||||| || ||||| || || | Sbjct 25769 CCGTAATCACGGTACCGGCTTATTTCAACGACTCACAGCGTCAGGCCACTAAGGACGCAG 25828 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | ||||| || || ||||| | ||||| ||||||||||| || || ||||| ||| Sbjct 25829 GTGCCATTGCTGGGCTGAATGTGCTGCGTATCATTAATGAACCTACGGCTGCCGCTATTG 25888 Query 474858 CTTATGGTCTTGATAAGAA 474876 | ||||| | || ||||| Sbjct 25889 CCTATGGATTGGACAAGAA 25907 >seq7452 Length=12074 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 321777 GTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTCAGTGCAATATTTGGATCA 321836 |||||||| | |||||| | || | ||| |||| || | ||||| || || ||| Sbjct 6422 GTAAGATTCATCGCAATAGATCGAGGAACACCGACTTGATCGATAGCAATGTTCGGGTCA 6481 Query 321837 GATGTGATAACTGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATA 321896 | |||||||||||||| | || | || ||||| || ||||| | ||| || | |||| Sbjct 6482 GCCGTGATAACTGTACGCGCCGAAAAGTCCACACGCTTCCCCATCAAATTACCACGAATA 6541 Query 321897 CGACCTTCTTTTCCACG 321913 ||||||||||| ||||| Sbjct 6542 CGACCTTCTTTCCCACG 6558 >seq5065 Length=19582 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 321777 GTAAGATTTTTTGCAATAATTAATGGTAAACCAACTTCATTCAGTGCAATATTTGGATCA 321836 |||||||| | |||||| | || | ||| |||| || | ||||| || || ||| Sbjct 5625 GTAAGATTCATCGCAATAGATCGAGGAACACCGACTTGATCGATAGCAATGTTCGGGTCA 5566 Query 321837 GATGTGATAACTGTACGACCAGACATATCAACACGTTTACCCATAAGATTTCCTCTAATA 321896 | |||||||||||||| | || | || ||||| || ||||| | ||| || | |||| Sbjct 5565 GCCGTGATAACTGTACGCGCCGAAAAGTCCACACGCTTCCCCATCAAATTACCACGAATA 5506 Query 321897 CGACCTTCTTTTCCACG 321913 ||||||||||| ||||| Sbjct 5505 CGACCTTCTTTCCCACG 5489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267030218494328