Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2611 95.1 1e-14 >seq2611 Length=58161 Score = 95.1 bits (104), Expect = 1e-14 Identities = 269/400 (67%), Gaps = 10/400 (3%) Strand=Plus/Minus Query 138180 GCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTA 138239 || ||||| || | ||| || ||||| || ||||| || || ||||| ||||| ||||| Sbjct 5760 GCCACACCGATGGAACCAACACCAGGGCCACCACCACCGTGAGGAATGCAGAAAGTCTTG 5701 Query 138240 TGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 || | || ||||| || || || ||||| ||| || | || | ||||| Sbjct 5700 TGAAGGTTCAGATGGCACACGTCAGCACCGATCCCACCCGGGTGGCAGAGCGCCACCTGA 5641 Query 138300 GCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCA-TGAACGATCTTACA 138358 ||||| | ||| || ||||| | || |||||| | || | || | |||| | | || Sbjct 5640 GCATTCATATTGGCGCCATCCATGTAGACCTGAGCTCCGT-GTGAGTGAATAAGGTC-CA 5583 Query 138359 T-ATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT-AATA 138416 | || | |||| | ||||||||||||| || || ||||| || ||||| || Sbjct 5582 TCATGTCCTTGATACCGGGTTCAAATACACCAAATGTGGAAGGATAAGTGATCATGAAGG 5523 Query 138417 CA-TGAGAGT-TCAAATGTATTCATGATTGCTTTCTTCTCTAGATCTTTGATGTCTATGT 138474 || | ||| | || | || || || ||| | || || | || | || Sbjct 5522 CACTTAGATTGTCCGA-GTGCTC-TGCCGCCTTAGCAGCCAAG-TCCTCCCGATCCACGT 5466 Query 138475 TGCCATCATCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAG 138534 | |||| |||||| |||| ||| | ||||||||||| || ||||| || ||||| |||| Sbjct 5465 TACCATTTTCATCAGACTTTACAACCACAACTTTCATGCCCGCCATTACAGCACTCGCAG 5406 Query 138535 GATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATT 138574 |||| || || || || ||| |||| || ||||| || || Sbjct 5405 GATTCGTACCGTGGGCAGACACTGGGATGAGACACACGTT 5366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578804536860720