Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq21229 116 1e-20 seq2994 116 1e-20 seq2498 116 1e-20 seq25 116 1e-20 seq7452 87.8 5e-12 seq5065 87.8 5e-12 >seq21229 Length=38019 Score = 116 bits (128), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 353978 TAATAATCACACCCCCAAGATAG--CTC-TTAATTGCTGTGGCGAGAGCACCAAGCGAGT 354034 |||| |||||| | ||| || | ||| || || |||| ||| || ||||||||||||| Sbjct 33434 TAATCATCACAACACCACCATTGAACTCCTTGATGGCTGAGGCAAGGGCACCAAGCGAGT 33375 Query 354035 CACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTG 354094 |||| || || |||| || || |||||||| | |||| |||||| | || |||||| | Sbjct 33374 CACGATCCAGATAATTCGTGGGCTCGTCAAGCACCAGAATGTGCGGGTTCAGCCACATGG 33315 Query 354095 CTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | ||||| ||||| ||||| |||||||| || || || || Sbjct 33314 CAGCAGCTAGAACCACCTTCACCTTCTGACCACCGGACAG 33275 Score = 86.0 bits (94), Expect = 2e-11 Identities = 168/242 (69%), Gaps = 15/242 (6%) Strand=Plus/Minus Query 354556 TGGAAACGCCACGCAATGTATTCTGTTGG-TGTCAGTTCAACATGGTTCTCAATATGATG 354614 |||||||||||| ||| |||| ||||| |||| || | || ||| || || || Sbjct 32901 TGGAAACGCCACTGAATATATTG-GTTGGCTGTCTCATCGAGGTGTGACTCGATGTGGTG 32843 Query 354615 AAATGCGTGCTGTGCGACATAAGCGAGACGCATATTAGGATGTTTCACGACCTTTGCGGC 354674 || || ||||| || || ||||| | |||||| ||||||||| |||| Sbjct 32842 GAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATGTTTCCACACCTGA----- 32788 Query 354675 TCCCTCTTCGTTGGGTTCAATTTCACCAACCATCAACTTAATCATTGTAGACTTTCCAGC 354734 || || | |||| |||| ||||||| || || |||||||| || ||||| ||||| Sbjct 32787 --CCACT--GGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGACTTACCAGC 32732 Query 354735 ACCATTAACACCTATTACTGCGATACGGGACGCCATAGAG-ACCTG-AACCGAAATGTTA 354792 |||||| ||| | || ||||||||| | |||| | || || || ||||||||| Sbjct 32731 ACCATTGGGACCGAGCACGGCGATACGG--CTGGATAGGGCACATGTTACTGAAATGTTA 32674 Query 354793 TT 354794 || Sbjct 32673 TT 32672 >seq2994 Length=27839 Score = 116 bits (128), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 353978 TAATAATCACACCCCCAAGATAG--CTC-TTAATTGCTGTGGCGAGAGCACCAAGCGAGT 354034 |||| |||||| | ||| || | ||| || || |||| ||| || ||||||||||||| Sbjct 23254 TAATCATCACAACACCACCATTGAACTCCTTGATGGCTGAGGCAAGGGCACCAAGCGAGT 23195 Query 354035 CACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTG 354094 |||| || || |||| || || |||||||| | |||| |||||| | || |||||| | Sbjct 23194 CACGATCCAGATAATTCGTGGGCTCGTCAAGCACCAGAATGTGCGGGTTCAGCCACATGG 23135 Query 354095 CTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | ||||| ||||| ||||| |||||||| || || || || Sbjct 23134 CAGCAGCTAGAACCACCTTCACCTTCTGACCACCGGACAG 23095 Score = 86.0 bits (94), Expect = 2e-11 Identities = 168/242 (69%), Gaps = 15/242 (6%) Strand=Plus/Minus Query 354556 TGGAAACGCCACGCAATGTATTCTGTTGG-TGTCAGTTCAACATGGTTCTCAATATGATG 354614 |||||||||||| ||| |||| ||||| |||| || | || ||| || || || Sbjct 22721 TGGAAACGCCACTGAATATATTG-GTTGGCTGTCTCATCGAGGTGTGACTCGATGTGGTG 22663 Query 354615 AAATGCGTGCTGTGCGACATAAGCGAGACGCATATTAGGATGTTTCACGACCTTTGCGGC 354674 || || ||||| || || ||||| | |||||| ||||||||| |||| Sbjct 22662 GAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATGTTTCCACACCTGA----- 22608 Query 354675 TCCCTCTTCGTTGGGTTCAATTTCACCAACCATCAACTTAATCATTGTAGACTTTCCAGC 354734 || || | |||| |||| ||||||| || || |||||||| || ||||| ||||| Sbjct 22607 --CCACT--GGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGACTTACCAGC 22552 Query 354735 ACCATTAACACCTATTACTGCGATACGGGACGCCATAGAG-ACCTG-AACCGAAATGTTA 354792 |||||| ||| | || ||||||||| | |||| | || || || ||||||||| Sbjct 22551 ACCATTGGGACCGAGCACGGCGATACGG--CTGGATAGGGCACATGTTACTGAAATGTTA 22494 Query 354793 TT 354794 || Sbjct 22493 TT 22492 >seq2498 Length=6471 Score = 116 bits (128), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 353978 TAATAATCACACCCCCAAGATAG--CTC-TTAATTGCTGTGGCGAGAGCACCAAGCGAGT 354034 |||| |||||| | ||| || | ||| || || |||| ||| || ||||||||||||| Sbjct 5960 TAATCATCACAACACCACCATTGAACTCCTTGATGGCTGAGGCAAGGGCACCAAGCGAGT 5901 Query 354035 CACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTG 354094 |||| || || |||| || || |||||||| | |||| |||||| | || |||||| | Sbjct 5900 CACGATCCAGATAATTCGTGGGCTCGTCAAGCACCAGAATGTGCGGGTTCAGCCACATGG 5841 Query 354095 CTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | ||||| ||||| ||||| |||||||| || || || || Sbjct 5840 CAGCAGCTAGAACCACCTTCACCTTCTGACCACCGGACAG 5801 Score = 86.0 bits (94), Expect = 2e-11 Identities = 168/242 (69%), Gaps = 15/242 (6%) Strand=Plus/Minus Query 354556 TGGAAACGCCACGCAATGTATTCTGTTGG-TGTCAGTTCAACATGGTTCTCAATATGATG 354614 |||||||||||| ||| |||| ||||| |||| || | || ||| || || || Sbjct 5427 TGGAAACGCCACTGAATATATTG-GTTGGCTGTCTCATCGAGGTGTGACTCGATGTGGTG 5369 Query 354615 AAATGCGTGCTGTGCGACATAAGCGAGACGCATATTAGGATGTTTCACGACCTTTGCGGC 354674 || || ||||| || || ||||| | |||||| ||||||||| |||| Sbjct 5368 GAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATGTTTCCACACCTGA----- 5314 Query 354675 TCCCTCTTCGTTGGGTTCAATTTCACCAACCATCAACTTAATCATTGTAGACTTTCCAGC 354734 || || | |||| |||| ||||||| || || |||||||| || ||||| ||||| Sbjct 5313 --CCACT--GGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGACTTACCAGC 5258 Query 354735 ACCATTAACACCTATTACTGCGATACGGGACGCCATAGAG-ACCTG-AACCGAAATGTTA 354792 |||||| ||| | || ||||||||| | |||| | || || || ||||||||| Sbjct 5257 ACCATTGGGACCGAGCACGGCGATACGG--CTGGATAGGGCACATGTTACTGAAATGTTA 5200 Query 354793 TT 354794 || Sbjct 5199 TT 5198 >seq25 Length=40886 Score = 116 bits (128), Expect = 1e-20 Identities = 123/160 (77%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 353978 TAATAATCACACCCCCAAGATAG--CTC-TTAATTGCTGTGGCGAGAGCACCAAGCGAGT 354034 |||| |||||| | ||| || | ||| || || |||| ||| || ||||||||||||| Sbjct 36301 TAATCATCACAACACCACCATTGAACTCCTTGATGGCTGAGGCAAGGGCACCAAGCGAGT 36242 Query 354035 CACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTG 354094 |||| || || |||| || || |||||||| | |||| |||||| | || |||||| | Sbjct 36241 CACGATCCAGATAATTCGTGGGCTCGTCAAGCACCAGAATGTGCGGGTTCAGCCACATGG 36182 Query 354095 CTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 | ||||| ||||| ||||| |||||||| || || || || Sbjct 36181 CAGCAGCTAGAACCACCTTCACCTTCTGACCACCGGACAG 36142 Score = 86.0 bits (94), Expect = 2e-11 Identities = 168/242 (69%), Gaps = 15/242 (6%) Strand=Plus/Minus Query 354556 TGGAAACGCCACGCAATGTATTCTGTTGG-TGTCAGTTCAACATGGTTCTCAATATGATG 354614 |||||||||||| ||| |||| ||||| |||| || | || ||| || || || Sbjct 35768 TGGAAACGCCACTGAATATATTG-GTTGGCTGTCTCATCGAGGTGTGACTCGATGTGGTG 35710 Query 354615 AAATGCGTGCTGTGCGACATAAGCGAGACGCATATTAGGATGTTTCACGACCTTTGCGGC 354674 || || ||||| || || ||||| | |||||| ||||||||| |||| Sbjct 35709 GAAAGCATGCTGAGCTACGTAAGCAAAACGCATCGAGGGATGTTTCCACACCTGA----- 35655 Query 354675 TCCCTCTTCGTTGGGTTCAATTTCACCAACCATCAACTTAATCATTGTAGACTTTCCAGC 354734 || || | |||| |||| ||||||| || || |||||||| || ||||| ||||| Sbjct 35654 --CCACT--GGTGGGCTCAACTTCACCAGTCAACATCTTAATCAACGTTGACTTACCAGC 35599 Query 354735 ACCATTAACACCTATTACTGCGATACGGGACGCCATAGAG-ACCTG-AACCGAAATGTTA 354792 |||||| ||| | || ||||||||| | |||| | || || || ||||||||| Sbjct 35598 ACCATTGGGACCGAGCACGGCGATACGG--CTGGATAGGGCACATGTTACTGAAATGTTA 35541 Query 354793 TT 354794 || Sbjct 35540 TT 35539 >seq7452 Length=12074 Score = 87.8 bits (96), Expect = 5e-12 Identities = 192/281 (68%), Gaps = 14/281 (5%) Strand=Plus/Plus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||||||||||||||| | || || || || |||||||| | || ||||| Sbjct 4988 CGCCGCTGAATATAACCAGTCTCGGCAGTCTTCACGGCAGTATCAATCAACCCTTCACGA 5047 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| ||||| || | || | ||| || |||| ||| | ||| | | Sbjct 5048 CCACCCATAGCGTGGAAAAAGAATTCCTGAGGT-GTCAAGCCTTTCAA-GTACGAGTTTT 5105 Query 302711 CAACGAAACCACGCGCCTCGGGC---GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || || ||||| || ||| ||||||| |||| | | || || || || | Sbjct 5106 CCACAAATCCACGACTTTCAGGCCCTAAATCGTC---CTTGCCATAATGCGGTAGCGTGC 5162 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 | | | | || || || || ||||| || || || |||||||| |||| || | || Sbjct 5163 GATGGTTAAACCCATACGGAATTCGCTTGCCTTCGACATTCTGCTGACCCACACAAGCAA 5222 Query 302828 TCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAG 302866 | ||||| |||||||| ||| | | |||||||| |||| Sbjct 5223 TAATCTGTGAAATATT--AATGAAAGAACCCTTGGAACCAG 5261 >seq5065 Length=19582 Score = 87.8 bits (96), Expect = 5e-12 Identities = 192/281 (68%), Gaps = 14/281 (5%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 || ||||||||||||||||| | || || || || |||||||| | || ||||| Sbjct 7059 CGCCGCTGAATATAACCAGTCTCGGCAGTCTTCACGGCAGTATCAATCAACCCTTCACGA 7000 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCT 302710 ||||||||||| ||||| || | || | ||| || |||| ||| | ||| | | Sbjct 6999 CCACCCATAGCGTGGAAAAAGAATTCCTGAGGT-GTCAAGCCTTTCAA-GTACGAGTTTT 6942 Query 302711 CAACGAAACCACGCGCCTCGGGC---GAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCC 302767 | || || ||||| || ||| ||||||| |||| | | || || || || | Sbjct 6941 CCACAAATCCACGACTTTCAGGCCCTAAATCGTC---CTTGCCATAATGCGGTAGCGTGC 6885 Query 302768 TGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAA 302827 | | | | || || || || ||||| || || || |||||||| |||| || | || Sbjct 6884 GATGGTTAAACCCATACGGAATTCGCTTGCCTTCGACATTCTGCTGACCCACACAAGCAA 6825 Query 302828 TCATCTGCGAAATATTTAAATCACTG--CCCTTGGAGCCAG 302866 | ||||| |||||||| ||| | | |||||||| |||| Sbjct 6824 TAATCTGTGAAATATT--AATGAAAGAACCCTTGGAACCAG 6786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471312478638882