Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq24131 145 9e-29 seq7557 105 8e-17 seq15263 98.7 1e-14 >seq24131 Length=32940 Score = 145 bits (160), Expect = 9e-29 Identities = 212/298 (71%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || || |||||||||||||||||| | | || | | ||| Sbjct 30696 GAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGTATTTGA 30637 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || || |||| |||||||||||| ||| ||||| ||||| || || || Sbjct 30636 ACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCATTCACAATGCCATCGCTCGCTGCAAAG 30577 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--GGA 869810 || || || || || ||||||||||| ||||| | ||| | || |||||||| | Sbjct 30576 AAGGCAAGTACATGTTTGATAAAGTGACGCTCATTGTCCGTAAGATTCACCCAGTCCTTA 30517 Query 869811 CGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 ||| | | | |||| ||||||||| ||||||| ||| ||||| || || |||| Sbjct 30516 AGGTCATGTACC--AAATCCAACTCCTCGGCCGTCCAGAACGAAGCCTCAGCTTTCTTGT 30459 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 |||||| ||| |||| || | | || || ||||| |||||||||||||| || || Sbjct 30458 ACATCTGCCACACTTCGTGCTCCTGAATGGGAAAGAGCACAAAGCGGTTGGGATTCTC 30401 Score = 143 bits (158), Expect = 3e-28 Identities = 226/316 (72%), Gaps = 6/316 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| | || || ||||| ||| |||||||||||||| ||||||| |||||||||| Sbjct 31293 GCCTTCGAATATTCACCCACACGCTTTTCGAAAAAGTTGGTTTTGCCCTGGAGCGAGATC 31234 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTT-CGCATCCGAGCGACGC 868809 | |||||||| ||| ||||| | | || ||| | || || || || Sbjct 31233 ATGTCCATCCAATCGAATGGGTTCTTTGCGTGATAAATCTTGGACACACCC-AGAGAGTA 31175 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||| | ||||| || |||||||| ||||||||||||||||| ||| |||||||||||| Sbjct 31174 GAGTAAACGGTCAGCAACAAACTCAATGTACTGGCACATGAGCGCGGAGTTCATGCCGAT 31115 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACG-A 868928 || | || || || || || | |||||| || | |||||||| || ||||| ||| | Sbjct 31114 CAGTTCAACAGGAAGGGAATCACGCACAAATTCGTGCTCGATCTTCACAGCCTC-ACGAA 31056 Query 868929 TGATCTGCCTGGGCACGTC-GGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 | |||| | || |||| | | | |||||||||| || ||| ||| | || || Sbjct 31055 TAATCT-CGTGCACACGGCTCTCTGGCAGCTTGTTGACCAGTTTCGAGTACATGAGACAT 30997 Query 868988 GCAAAGTCGCAGTGCA 869003 |||||||| ||||| Sbjct 30996 GCAAAGTCTGTGTGCA 30981 Score = 95.1 bits (104), Expect = 1e-13 Identities = 193/281 (69%), Gaps = 7/281 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTT-GCTAAAGGCGAGGCCGGGCATGAGGCCGCGCT 869237 ||||||||| |||||||| | || || | ||| | || || |||||||| ||||||| Sbjct 30979 ACCTTCGTCACGACTGATTAACTCATTCGAGAAACTC-AGTCCAGGCATGAGCCCGCGCT 30921 Query 869238 TCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 869297 | |||||||||||||||| || ||| || |||||||| ||||| || || | ||||| Sbjct 30920 TTTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATGCCTTCAACTGAGGCAA 30861 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGA-TCCACTTCATCGCC 869356 | | | || ||||| || | | ||| | | | | | | ||| |||| ||| Sbjct 30860 ATGCTAACAGGCGCTCCGCGTA--CGACGATACACGC--GGATCACACCATTTCAGTGCC 30805 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 |||| ||| || || | || | | | || |||||||| || |||||||||| || Sbjct 30804 CAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACGTAAGAGGTGGTTTTTC 30745 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATA 869457 || ||||| | ||| || || || || ||||| || Sbjct 30744 TCCATAACATCCTTAATATACGTATCAATGAGCAGCGAGTA 30704 >seq7557 Length=41249 Score = 105 bits (116), Expect = 8e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 19042 AAGAGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCG 19101 |||||||| | || ||| ||||||||||| ||||| | || | || |||| Sbjct 8516 AAGAGGACTCGACGGGTGGCGTCGTGACGTGCGTTATCCGCAATGCCCCAGTCGGTCTCG 8575 Query 19102 GCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGG 19161 ||||||| || ||||| ||||| |||| | || || ||||||||| |||| || |||| Sbjct 8576 GCGAGCCATGTTTTGATAAGATGCAGGCTGTCCTTGCACACGCCATGATGTCCATTCCGG 8635 Query 19162 CCACCAAGGGATTCGAGATTGGC 19184 |||||||||| |||||||||||| Sbjct 8636 CCACCAAGGGTTTCGAGATTGGC 8658 >seq15263 Length=38747 Score = 98.7 bits (108), Expect = 1e-14 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1628362 TCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGAC 1628421 ||||| | ||||| |||| |||| || |||||||| ||| |||||| || | | Sbjct 34808 TCAAACTCGGCGCCCCAGCATTCGTACAAACCGGGCGCTTCGTTCGGACAGAATAAACTC 34867 Query 1628422 CAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAG 1628481 || || ||| || | |||| |||||| | ||| |||||| || ||||| Sbjct 34868 CACTCTCCATTGGCTTCTACGCGCTTCATAAACAAATCAGGAATCCACAAGGCATAAAAC 34927 Query 1628482 AGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACA 1628541 | || || ||||| | ||| ||||||||||| || | ||| | | |||| Sbjct 34928 AAATCACGTGCCCGATGTAACTCGTTGCCGTGGTTTTTCCGTAAGTCCAAAAACTCGAGC 34987 Query 1628542 ATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | |||||| ||||||||||||| |||| |||||| | ||| ||||| || |||||||| Sbjct 34988 ACGTCGGCATGCCACGGCTCCAAGTAGATGGCAAACGAGCCTTTGCGTTTCCCGCCGCC 35046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104941015401162