Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq24131 145 1e-28 seq7003 109 9e-18 seq15263 98.7 2e-14 seq7512 89.7 8e-12 >seq24131 Length=32940 Score = 145 bits (160), Expect = 1e-28 Identities = 231/326 (71%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 793893 ACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGC 793952 ||||| ||||| | ||| || ||||| ||| |||||||||||||| ||||||| |||| Sbjct 31299 ACGCCAGCCTTCGAATATTCACCCACACGCTTTTCGAAAAAGTTGGTTTTGCCCTGGAGC 31240 Query 793953 GAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCT-CGCACCCGAG 794011 ||||||| |||||||| ||| ||||| | | || ||| | ||||| || Sbjct 31239 GAGATCATGTCCATCCAATCGAATGGGTTCTTTGCGTGATAAATCTTGGACACACCC-AG 31181 Query 794012 CGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCAT 794071 || || | ||||| || || || |||||||||||||||||||| |||| |||||| Sbjct 31180 AGAGTAGAGTAAACGGTCAGCAACAAACTCAATGTACTGGCACATGAGCGCGGAGTTCAT 31121 Query 794072 GCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 |||||| || | || || || || || | ||||| || | |||||||| || ||||| Sbjct 31120 GCCGATCAGTTCAACAGGAAGGGAATCACGCACAAATTCGTGCTCGATCTTCACAGCCTC 31061 Query 794132 GATGATGATCTGCCTGGGCACGTCGGAC-GACGGCTTGTCGACGAGCATCGTGTAGAGCA 794190 || |||| | || |||| | | | | |||||| ||| || ||| ||| | | Sbjct 31060 ACGAATAATCT-CGTGCACACGGCTCTCTGGCAGCTTGTTGACCAGTTTCGAGTACATGA 31002 Query 794191 GGCAGGCAAAGTCGCAATGCAGACCT 794216 | || |||||||| |||| |||| Sbjct 31001 GACATGCAAAGTCTGTGTGCATACCT 30976 Score = 136 bits (150), Expect = 6e-26 Identities = 229/328 (70%), Gaps = 5/328 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||||||||| |||||||| || || || || | || || |||||||| |||||||| Sbjct 30979 ACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGTCCAGGCATGAGCCCGCGCTT 30920 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 |||||||||||||||| ||| ||| || |||||||| ||||| || || | |||||| Sbjct 30919 TTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATGCCTTCAACTGAGGCAAA 30860 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGA-TCCACTTCATCGCCC 794518 | | || ||||| || | | | | | | | | | | ||| |||| |||| Sbjct 30859 TGCTAACAGGCGCTCCGCGTA--CGACGATACACGC--GGATCACACCATTTCAGTGCCC 30804 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | || || || | || | | | || |||||||| || |||||||||| |||| Sbjct 30803 AGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACGTAAGAGGTGGTTTTTCT 30744 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | | ||||| | || || || ||||| |||||||| || ||||| || || | Sbjct 30743 CCATAACATCCTTAATATACGTATCAATGAGCAGCGAGTAAACTTCGGAGTGAATATTCT 30684 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || ||||||||||| |||||||| Sbjct 30683 CAATCGCAATCTGGAAGCCGTAAAAGCA 30656 >seq7003 Length=4618 Score = 109 bits (120), Expect = 9e-18 Identities = 140/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| ||||| || ||||| || |||||||| | |||| |||||| ||| | Sbjct 1500 ACTTGGTGACAGCCTTCGTGCCCTCAGAAACGGCGTGTTTTGCCAATTCGCCAGGCAACA 1559 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG---C 1485589 | || || || || |||||||||||||| || ||| | || ||| ||| || | Sbjct 1560 TTAGACGGACTGCTGTCTGGATCTCGCGACTG--GATAAAG-TGGACTTCTTATTGTAAC 1616 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || || ||||||| ||||||| |||| |||||||||| || ||||||| Sbjct 1617 GCGAGAGCTTACCAGCCTCGGACGCGATGCGCTCGAAAATGTCGTTGATGAATGAGTTCA 1676 Query 1485650 TGATCGACAT 1485659 | |||||||| Sbjct 1677 TAATCGACAT 1686 >seq15263 Length=38747 Score = 98.7 bits (108), Expect = 2e-14 Identities = 237/365 (65%), Gaps = 0/365 (0%) Strand=Plus/Plus Query 2071648 GCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGCCGAC 2071707 |||||||||| ||||||| | ||| | |||||||| ||||| || | |||||| || Sbjct 34682 GCGTCCTTGTACAGCATGAACGGCACGCCCGTCTCAATCTGGGCGTCCAAGATGGCAAAC 34741 Query 2071708 CAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNNNNNNNNNNNNNNAG 2071767 || | ||| | || || | ||| |||||| || | | Sbjct 34742 CACAATTGTTGGGCTTTCATGGTCTTCCGCGCGCGTCCATCGTGTTCGTACTGTGCGTAC 34801 Query 2071768 AGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAG 2071827 | | ||||| ||||||| ||| |||| || |||||||| ||| ||| || || Sbjct 34802 AAGTTTTCAAACTCGGCGCCCCAGCATTCGTACAAACCGGGCGCTTCGTTCGGACAGAAT 34861 Query 2071828 AGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCG 2071887 | ||| || || | | ||||| |||||||| || |||||| | | Sbjct 34862 AAACTCCACTCTCCATTGGCTTCTACGCGCTTCATAAACAAATCAGGAATCCACAAGGCA 34921 Query 2071888 TAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAG 2071947 ||||| | ||| || ||||| | ||| ||||||||||| || | ||| | | Sbjct 34922 TAAAACAAATCACGTGCCCGATGTAACTCGTTGCCGTGGTTTTTCCGTAAGTCCAAAAAC 34981 Query 2071948 TCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCG 2072007 |||| | |||||| ||||||||||||| |||| |||||| | ||| ||||| || ||| Sbjct 34982 TCGAGCACGTCGGCATGCCACGGCTCCAAGTAGATGGCAAACGAGCCTTTGCGTTTCCCG 35041 Query 2072008 CCGCC 2072012 ||||| Sbjct 35042 CCGCC 35046 >seq7512 Length=32548 Score = 89.7 bits (98), Expect = 8e-12 Identities = 312/481 (65%), Gaps = 7/481 (1%) Strand=Plus/Plus Query 2018916 CCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAA-CGAGCACGC 2018974 |||||| ||||||||||||| || ||||| | || |||||||||| || | | | Sbjct 9381 CCGTGGGTCGAAAAGTACCGTCCACGCGTGCTAGCAGATGTCGTGGGCAATCGCG-ATAC 9439 Query 2018975 CGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCGGG 2019034 | || || | | |||| | ||| |||||| | || | | || | || Sbjct 9440 AATCTCCAGTCTTCAATCTATGGCTCAGGTCGGGAACATGACGAATTTGATCCTATCAGG 9499 Query 2019035 CCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGC 2019094 || || || || || || || ||||| || ||| || || |||| || ||||| | Sbjct 9500 TCCACCAGGGACAGGGAAAACAACGAGTATTT-GTGTCTTGCACGCGAACTATTGGGTCC 9558 Query 2019095 GGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGT 2019154 | | | | || || || |||||||||||||| ||||| || || | || ||| Sbjct 9559 CAGTGTCAAACAAGCGGTCCTGGAACTCAATGCGTCGGACGATCGTGGGATTGAAACCGT 9618 Query 2019155 GCGTAGAATCATC--AAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCAC 2019212 |||||| | ||| || | ||| | ||||| || || || || || || ||| Sbjct 9619 GCGTAGTAAAATCAAAATGTTTGCGCAACAAAAAG--TCACGCTTCCTCCTGGTCGACAC 9676 Query 2019213 AAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGA 2019272 || | | ||||| ||||| ||||| | | | || | || |||||||| || || ||| Sbjct 9677 AAAATTGTAATCCTAGATGAAGCCGATTCCATGACAGCTGCTGCCCAGCAAGCGCTACGA 9736 Query 2019273 TCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCG 2019332 || ||||||| | | | |||||| || || || || || || || | || || Sbjct 9737 CGTACAATGGAAATCTTTAGCTCCACGACACGATTCGCCCTCGCGTGTAATAATTCCACG 9796 Query 2019333 ATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGAC 2019392 | ||||||| || | || || || || ||||| || ||||| |||| || | ||| Sbjct 9797 AAAATCATCGAGCCCATTCAAAGTCGCTGTGCCATTTTACGCTTCACGCGACTGCCAGAC 9856 Query 2019393 G 2019393 | Sbjct 9857 G 9857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913397051009054