Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_024146.1 Length=56702 Score E Sequences producing significant alignments: (Bits) Value seq12040 82.4 3e-11 >seq12040 Length=21001 Score = 82.4 bits (90), Expect = 3e-11 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 4173 CCATGCACATATGTTTTGCATCGATGTAGACACACACAGCTTTCGGGTCTAAGTGTTCCA 4232 |||| ||||||||| | || || || || |||| |||| || || | | ||| Sbjct 2874 CCATACACATATGTGTCGCTTCAATCACCACTGCCACACCTTTAGGCTCAATGACACCCA 2815 Query 4233 CGATAGCATCCGCAATCTGATTAGTCAGACGTTCTTGGACTTGCAAACGTCGAGCGAAAG 4292 || |||| |||||| || || ||||| || ||||||||||||| ||||| || || Sbjct 2814 TTATTGCATGCGCAATTTGTTTTGTCAGTCGCTCTTGGACTTGCAGCCGTCGGGCAAACA 2755 Query 4293 CATCAACTACCCGAGATAACTTGCTGAGACCGACGATTTTTCCATTTGGGACATACCCAA 4352 | ||| || |||| | || || | || | | ||| |||||||||| ||||| | Sbjct 2754 CTTCACTCACACGAGCAAGTTTACTCAATCCCAAAACTTTCCCATTTGGGATGTACCCGA 2695 Query 4353 CCACTGCATGACCAATAATAGGAGCCATGTGATGCTCACA-ATGACTATATACAGGGATA 4411 | | | || ||| || |||| ||||| ||||| ||| ||| | | || Sbjct 2694 TATGTACTTTGCCCGTAAACGGTACCATATGATGTTCACACATG-GAATAGAGATCAATG 2636 Query 4412 TCACGGACGATGACCATTTCATCA 4435 ||||| || ||||||||||| ||| Sbjct 2635 TCACGTACAATGACCATTTCGTCA 2612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181267123527648