Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq13324 156 8e-33 seq18532 127 4e-24 >seq13324 Length=6237 Score = 156 bits (172), Expect = 8e-33 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 ||||| || || ||||| || || || ||||| || || ||||||| || | | ||| Sbjct 6117 CGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCG 6058 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || |||||||| || |||||||||||||| | || || ||||| || || |||||||| Sbjct 6057 TCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTG 5998 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||||||||| || || || |||||||| || || || || || | || || Sbjct 5997 TCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGATT 5938 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||| |||| || || ||||| ||||||||| || Sbjct 5937 GTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATTGTT 5899 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||||||||| || || || |||||||| || || || || Sbjct 6237 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACA 6178 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| ||||| || || ||||| |||||||| Sbjct 6177 TCGAGCGTGATTGTCTTGCCCGTCAATGTTTTCACAAAAATCTGCAT 6131 >seq18532 Length=6745 Score = 127 bits (140), Expect = 4e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || || |||||||||||||| | || || || || || ||||||||| Sbjct 5184 CCATCCTCGAGCTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCAGGTGGGATTCCTTCC 5243 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || || ||||| || || || ||||| |||||||| || || || || ||||| || Sbjct 5244 TTGTCCTGAATTTTGGCCTTAACATTGTCAATCGTGTCGGACGGCTCCACATCCAACGTG 5303 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||||||| ||||| ||||| |||||||||||||| Sbjct 5304 ATGGTCTTGCCCGTCAAGGTCTTCACAAATATCTGCAT 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981490241200454