Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq26595 86.0 8e-12 seq25147 86.0 8e-12 seq4610 86.0 8e-12 seq4151 86.0 8e-12 seq22810 82.4 1e-10 seq21117 82.4 1e-10 seq20858 82.4 1e-10 >seq26595 Length=1439 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 332 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 273 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 272 TCCCGGACGGGAAGC 258 >seq25147 Length=1475 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 902 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 961 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 962 TCCCGGACGGGAAGC 976 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| | ||| |||| |||||| || Sbjct 377 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGTGGGTGACCCGGGTTCAAT 436 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 437 TCCCGGACGGGAAGC 451 >seq4610 Length=7725 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 6575 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 6634 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 6635 TCCCGGACGGGAAGC 6649 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 7101 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 7160 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 7161 TCCCGGACGGGAAGC 7175 >seq4151 Length=3451 Score = 86.0 bits (94), Expect = 8e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 846 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 787 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 786 TCCCGGACGGGAAGC 772 >seq22810 Length=3496 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||||| ||| | |||| |||| |||||| || Sbjct 2681 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGTC-GTCACGCGGGTGACCCGGGTTCAAT 2623 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 2622 TCCCGGACGGGAAGC 2608 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| |||| |||| |||||| || Sbjct 3208 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCAAGCGGGTGACCCGGGTTCAAT 3149 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 3148 TCCCGGACGGGAAGC 3134 >seq21117 Length=13102 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| ||||||||||||||||||||||| |||| ||||| | |||| |||| |||| | || Sbjct 12768 ATTTCTCGTTAGTATAGTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTACAAT 12827 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 12828 TCCCGGACGGGAAGC 12842 >seq20858 Length=2624 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| |||||||||||| |||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 1598 ATTTCTCGTTAGTATATTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 1539 Query 8716 TCCCCGACGAGGAGCAGA 8733 |||| |||| | ||| || Sbjct 1538 TCCCGGACGGGAAGCTGA 1521 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||| |||||||||||| |||||||||| |||| ||||| | |||| |||| |||||| || Sbjct 2125 ATTTCTCGTTAGTATATTGGTTAGTATACCCGCCTGTCACGCGGGTGACCCGGGTTCAAT 2066 Query 8716 TCCCCGACGAGGAGC 8730 |||| |||| | ||| Sbjct 2065 TCCCGGACGGGAAGC 2051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652626211239840