Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq15263 158 1e-33 seq13324 138 1e-27 seq18532 120 3e-22 >seq15263 Length=38747 Score = 158 bits (174), Expect = 1e-33 Identities = 304/440 (69%), Gaps = 10/440 (2%) Strand=Plus/Plus Query 147959 ATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACGACATGAG 148018 ||||||||||||||| || || ||| | ||||||||| ||||| |||| |||| Sbjct 33697 ATAGTACATGCCCGTTTTCAGTCCCTTTTTCCATGCGTAAAAGTGCATGGACG---TGAG 33753 Query 148019 CGTG-TA--CGTCGGGTGCGGCACAAACAGA-TTAAACGACTGGCTCTGGTCAATGAACG 148074 | || |||||||| ||||| | | || | |||||| ||||| |||| ||| Sbjct 33754 TTTACTAATCGTCGGGT-CGGCAATATGAATGTTTAGCGACTGACTCTGACAAATGTACG 33812 Query 148075 CGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCGTCTTGT 148134 ||||||| || || || | || | | |||| || || ||||| | ||||||| Sbjct 33813 CGCCACGATCGGCCGCAAGATCGAGCACGGCCTTTTGTTTAATTTCCCACACTGTCTTGT 33872 Query 148135 ACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGT-GCGCA 148193 || ||||| ||| ||||||| | | || || || || | || | ||| Sbjct 33873 ACTTTTCCTTGACGTGAGGGGGAATGTTTTTCACTTTTTGTACGGACCCACCGTCGTGCA 33932 Query 148194 AAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATCAGA 148253 ||| | || ||||||| ||| ||| | ||| ||| || || || |||| |||| | Sbjct 33933 AAATT-TGGTTGCGCACTTCAGGCGTCCAAAGGCCGAGATCAATGAGCTCATTCATCAAA 33991 Query 148254 TACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTA 148313 || | ||||| | | |||||||||||| | |||||||| |||| ||| |||| Sbjct 33992 TATTTGTTCACAATCGTAAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGACGTA 34051 Query 148314 AACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTAC 148373 ||||||||| ||| || |||||||| | ||||||||| |||| || || |||||| | Sbjct 34052 TACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATGGGC 34111 Query 148374 GCTACCAGCAGCGAGTTGCG 148393 || || |||| ||||||||| Sbjct 34112 GCCACGAGCAACGAGTTGCG 34131 >seq13324 Length=6237 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||| ||||| || |||||||| | | ||| | |||||| || Sbjct 6108 AAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGTACGCCCGTCCTCTAGT 6049 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || || ||||||||||| || || || ||||||||||| ||| Sbjct 6048 TGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACCTTCCTTGTCTTGAATC 5989 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | |||| |||||||| |||||||| |||| |||| || ||||| Sbjct 5988 TTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAGCGTGATTGTCTTGCCC 5929 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || ||||||||||| Sbjct 5928 GTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq18532 Length=6745 Score = 120 bits (132), Expect = 3e-22 Identities = 148/196 (76%), Gaps = 5/196 (3%) Strand=Plus/Plus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCG 133526 || |||| || || ||||| ||| ||| ||| | | | ||||||||||||||||| || Sbjct 5150 ACCCTTT-TGGATGTTGTAGTCGGCCAGTGTGCGGCCA-TCCTCGAGCTGCTTGCCAGCA 5207 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTTGAG 133585 | || || ||||||||||| || ||||| ||||||||||| ||| ||| | ||| | Sbjct 5208 AAGATTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTC-CTGAATTTTGGCCTTAAC 5266 Query 133586 CTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTT 133645 | |||| |||||||| |||||||| || | |||| ||| ||||| |||| || || Sbjct 5267 ATTGTCAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTT 5326 Query 133646 TACGAAAATCTGCATG 133661 || || ||||||||| Sbjct 5327 CACAAATATCTGCATG 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483258938630640