Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq15263 120 7e-22 >seq15263 Length=38747 Score = 120 bits (132), Expect = 7e-22 Identities = 268/399 (67%), Gaps = 5/399 (1%) Strand=Plus/Minus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 |||||| | || || ||||| ||| ||| | |||||||| |||||||| ||||| ||| Sbjct 35271 CAATTGTCCTCGTGTTTTCTATTAGCAATGCAAGATGATTCGATTGAAGGGATTTACGAT 35212 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 | |||||| || ||| ||| |||||| | ||||| || || || | ||| Sbjct 35211 ACGCTTAAACAATGTGCCTGTATCTCTAAATGGGCCGGAGGGATAGGGATCAGTATGCAT 35152 Query 110631 GATATTCGCTCAAA-AGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGT 110689 | ||||| ||| | || | ||| || | | || | || || ||| | | Sbjct 35151 AACATTCGAGCAACCAACAGTTACATTCGGGGCACCAACGGCTCCTCGAATGGGA-TCAT 35093 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGA-- 110747 ||| ||||| | ||||| || || || ||| |||||| ||||||| || || | Sbjct 35092 TCCCATGTTGCGCGTCTTTAATGATACGGCACGGTATGTGGATCAAGGCGGCGGGAAACG 35033 Query 110748 -AATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 || ||||| ||||| ||||| | || || |||||| | || | | || || || || Sbjct 35032 CAAAGGCTCGTTTGCCATCTACTTGGAGCCGTGGCATGCCGACGTGCTCGAGTTTTTGGA 34973 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | || ||||| || || || ||| | ||||||||||| |||||||| |||| Sbjct 34972 CTTACGGAAAAACCACGGCAACGAGTTACATCGGGCACGTGATTTGTTTTATGCCTTGTG 34913 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 |||| | ||||| || ||||| || || ||| ||||| Sbjct 34912 GATTCCTGATTTGTTTATGAAGCGCGTAGAAGCCAATGG 34874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186405491039346