Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15263 113 4e-20 seq13324 107 2e-18 seq18532 89.7 5e-13 >seq15263 Length=38747 Score = 113 bits (124), Expect = 4e-20 Identities = 732/1158 (63%), Gaps = 33/1158 (3%) Strand=Plus/Plus Query 146587 CGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGATTGTGAATCGAAGTC 146646 || ||||| |||||||||||||| || || | ||| | || | ||| || || || Sbjct 33692 CGTAAATAGTACATGCCCGTTTTCAGTCCCTTTTTCCATGCGTAAAAGTGCATGGACGTG 33751 Query 146647 ATGATGGCGTA-CGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATGAA 146705 | | | | | |||||| || || | || || | ||| || || ||| ||| | Sbjct 33752 A-GTTTACTAATCGTCGGGTCGGCAATATGAATGTTTAGCGACTGACTCTGACAAATGTA 33810 Query 146706 AGCGTTGCGGTCGGCCGCCATCTCAATCA-TGCGTTTTGTCTTCATTTCCCAAGCGGTTT 146764 ||| || |||||||| | || | || || |||||| || |||||||| | || | Sbjct 33811 CGCGCCACGATCGGCCGCAAGATCGAGCACGGCCTTTTGT-TTAATTTCCCACACTGTCT 33869 Query 146765 TGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGT-GC 146823 ||||| |||| ||| | ||||| || | ||||| | || || || | Sbjct 33870 TGTACTTTTCCTTGACGTGAGGGGGAATGTTTTTCACTTTTTGTACGGACCCACCGTCGT 33929 Query 146824 GCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAATT 146883 |||||| | | ||| || | ||| ||||| ||||| || | |||||| |||| || Sbjct 33930 GCAAAATTTG-GTTGCGCACTTCAGGCGTCCAAAGGCCGAGATCAATGAGCTCATTCATC 33988 Query 146884 AAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTA 146943 ||||| | || || | ||||||||| |||| || || | |||| |||| Sbjct 33989 AAATATTTGTTCACAATCGTAAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGAC 34048 Query 146944 GTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATG 147003 || | || |||| || ||||| ||||| | || || ||||| | || || |||||| Sbjct 34049 GTATACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCATG 34108 Query 147004 TACGCCACCAACAATGAATTTCGCAGACCGTAC--GCACGGATGTTGTCCTTCAAAGTTT 147061 |||||| | ||| || || || | |||||| | | ||| |||||||| || | Sbjct 34109 GGCGCCACGAGCAACGAGTTGCGAATCCCGTACTTGATCACCTGT--TCCTTCAATGTGT 34166 Query 147062 GCCAGTCCCACA---TCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTC 147118 ||| ||||||| || || || |||||| ||||| || |||||| | ||| Sbjct 34167 TCCAATCCCACAAGCCTGAGGACGGTGTCACGCCCCACAAATCAAACTGGAAGATCCCTT 34226 Query 147119 GACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGC 147178 ||| || || ||| || ||||| ||| ||| | || | |||| || | Sbjct 34227 TACTCGCAGGGGAGCCTGCAAACGTCTCGTACGGTCC-CAGTTCTTTGGCAATCTCCATC 34285 Query 147179 -TTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCT 147237 | ||| | || || | || |||||||| ||| | ||||| | | |||| Sbjct 34286 GACGTCTCCATGGCAGCAAAATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCGCT 34345 Query 147238 TCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCG 147297 || |||||||| | || | || || | ||| |||||||| | ||||||| ||| Sbjct 34346 TCGTCGCTCTCAAATGGATAATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACCCCG 34405 Query 147298 ACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCT--CGCTATGGGATAGTGGT 147355 | || || || |||||| ||| | | || ||| | || ||| || | | Sbjct 34406 ATCCCAATCGGACGATGCCGCATATTG--GACGTACGTGCTTCCTTTACGGGGTAATAAT 34463 Query 147356 TGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCT 147415 || |||||| | |||||| ||||| ||| || ||||| || | | | ||| | Sbjct 34464 TGACATCAATCACCTTGTTTAGGTTTCGCGTCACGACTTTGGTCACGTCGTACAATTTTT 34523 Query 147416 CGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGAT 147475 |||| | | | ||| || ||| | || | | || || | || || || | Sbjct 34524 GAAAATTGAACGCACGGTCGTCCACAAAT-----TTCGGTAAC-GCCACCGATGCGAGGT 34577 Query 147476 TGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTG 147534 | || |||||| || || |||| || |||||| | | ||| ||||| ||| || Sbjct 34578 TACACACGGCCACTTCATCGGGCGACG-TGTACTCAATCACTTCACAGCACAAGTTACTC 34636 Query 147535 CATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGC 147594 || || || | ||| || ||||| || ||||| |||||| ||| | ||| Sbjct 34637 GATCGAATCGTGCCGAGATTCTGTTGATTCGACTTGCGATTCGCCGCGTCCTTGTACAGC 34696 Query 147595 ATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCTGC 147651 ||| |||| |||| ||||| | || | || | ||| ||||| || | || Sbjct 34697 ATGAACGGCACGCCCGTCTCAATCTGGGCGTCCAAGATGGCAAACC---ACAATTGTTGG 34753 Query 147652 GCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAAC 147711 ||| || || ||| ||| || |||| ||||||| | ||||||| |||||| Sbjct 34754 GCTTTCATGGTCTTCCGCGCGCGTCCATCGTGTTCGTACTGTGCGTACAAGTTTTCAAAC 34813 Query 147712 TCGTCGCCGTAGCAATCG 147729 ||| |||| |||| ||| Sbjct 34814 TCGGCGCCCCAGCATTCG 34831 >seq13324 Length=6237 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||||||| | | ||||| || || |||||||| || | || Sbjct 6124 ACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGCGT 6065 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 |||| || || || || || || | | ||||||||||||| || ||||| || || || Sbjct 6064 ACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGAATACC 6005 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| ||| |||| | || | || |||| ||||||||| |||| Sbjct 6004 TTCCTTGTCTTGAATCTTTGCCTTCACGTTGTCAATCGTGTCGGACGGCTCCACATCGAG 5945 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || ||||| ||||| | ||||||||||| Sbjct 5944 CGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCAT 5903 >seq18532 Length=6745 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 ||||| |||||||||||| || || || ||| |||||||| || || | | ||||| Sbjct 5154 TTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATT 5213 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 |||||||| || || || || || ||||| || || |||||| || | | || Sbjct 5214 AGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGTCA 5273 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | || |||| ||||||||| || | ||| | || || || |||| || || | || Sbjct 5274 ATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAT 5333 Query 132116 ATCTGCATG 132124 ||||||||| Sbjct 5334 ATCTGCATG 5342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476451618654960