Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq5719 167 3e-36 >seq5719 Length=28269 Score = 167 bits (184), Expect = 3e-36 Identities = 295/425 (69%), Gaps = 4/425 (1%) Strand=Plus/Minus Query 146907 CAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTG 146966 |||||| ||| || |||||||||||||| || || || || ||||| || | || Sbjct 20254 CAGCTGCTTTTGAAGTGGCTCCACGTGGTTTAGATACACATGTGCGTCACCGATAACATG 20195 Query 146967 CACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTA 147026 | ||| || || || || || || || || || || || | | || ||||||| ||| Sbjct 20194 AATAAACTCGCCAGGTTTCAGCCCAGTTACTTGAGCAACTAAGCGCGTAAGCAGCGCGTA 20135 Query 147027 GCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCA 147086 |||||| || || ||||| || || || |||||||| | || | ||| |||| || || Sbjct 20134 GCTGGCAATATTAAAGGGAACTCCAAGCCCCATGTCGGCGGAACGCTGATACATTTGACA 20075 Query 147087 CGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || | ||| ||||| |||||||| || ||||| | ||||| || || |||| |||||| Sbjct 20074 TGACAACTCACCGTCCGCCACGTAGAATTGGCAAAACATGTGACAAGGTGGCAACGCCAT 20015 Query 147147 GGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGCCTG-CTCTCGGGGTTCC 147205 || | || ||||| |||||||| ||||| | ||| | ||| | | | || |||||| Sbjct 20014 TTCGTGGAGATCCGCTGGGTTCCAAGCCGAAAGCACAATCCGACGGTCACT-GGGGTTTG 19956 Query 147206 TCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCC 147265 | || || || ||| | |||||||||||||| || || || | || | Sbjct 19955 AACGGAGCTTGTCAATCACCTCCGCGAGCTGGTCCACGCCTTGACCAGTATAATCTG-CA 19897 Query 147266 CGCA-GTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGG 147324 ||| | | ||| |||| |||||||| | ||| || ||||| || || || || || Sbjct 19896 TGCATATTCGTGTATGTGGCACCAAAGTGACGCCATTGAAAGCCATATACAGGTCCGAGA 19837 Query 147325 TCGCC 147329 || || Sbjct 19836 TCTCC 19832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583292633630400