Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq24131 212 9e-49 seq7003 102 1e-15 >seq24131 Length=32940 Score = 212 bits (234), Expect = 9e-49 Identities = 407/587 (69%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGA-TATGGGAAATGTA 1455789 || || || ||||||||||| || || ||||| | | || || | | ||| | ||||| Sbjct 30401 GAGAATCCCAACCGCTTTGTGCTCTTTCCCATTCAGGAGCA-CGAAGTGTGGCAGATGTA 30459 Query 1455790 CCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGAC---A 1455846 | | |||| | ||||| || || ||||| ||||||||| | || | | ||| | Sbjct 30460 CAAGAAAG-CTGAGGCTTCGTTCTGGACGGCCGAGGAGTTGGATTTGGTACATGACCTTA 30518 Query 1455847 CGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCT 1455906 || |||||||| || | ||| | ||||| || || ||||| || || || |||| Sbjct 30519 AGG---ACTGGGTGAATCTTACGGACAATGAGCGTCACTTTATCAAACATGTACTTGCCT 30575 Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 | ||| || || ||||||||||| ||| |||||||||||| ||| | || || Sbjct 30576 TCTTT-GCAGCGAGCGATGGCATTGTGAATGAGAACCTGGCCATGAACTTCAGCAACGAA 30634 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 || ||| | || || || |||| |||||||| |||||||| || || || || || ||| Sbjct 30635 GTTCAAATACCTGAAGCTCGTTGCTTTTACGGCTTCCAGATTGCGATTGAGAATATTCAC 30694 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || ||| |||||||| || || || || || | ||||| | ||||| ||||| Sbjct 30695 TCCGAAGTTTACTCGCTGCTCATTGATACGTATATTAAGGATGTTATGGAGAAAAACCAC 30754 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 ||||| || |||||||| || | | | || | || || ||| ||||||| |||| Sbjct 30755 CTCTTACGTGCCATCGAAACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGAAA 30814 Query 1456147 TGG-ATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTC 1456204 ||| | | | | | | ||| | | || ||||| || | | |||||| | || Sbjct 30815 TGGTGTGATC--CGCGTGTATCGTC-GTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTT 30871 Query 1456205 GAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTC 1456264 || ||||| |||||||| || ||| || |||||||||||||||| |||||||| ||| Sbjct 30872 GAAGGCATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTC 30931 Query 1456265 ATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAG 1456311 ||||| || | | | || || || || |||||||| ||||||| Sbjct 30932 ATGCCTGGAC-TGAGTTTCTCGAATGAGTTAATCAGTCGTGACGAAG 30977 Score = 141 bits (156), Expect = 1e-27 Identities = 235/329 (71%), Gaps = 8/329 (2%) Strand=Plus/Plus Query 1456447 AGGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTC-GA 1456505 |||| ||||| |||||||| ||||| | ||| ||| || |||||||||| | | || Sbjct 30976 AGGTATGCACACAGACTTTGCATGTCTCATGTACTCGAAACTGGTCAACAAGCTGCCAGA 31035 Query 1456506 CCGACGTGCCCAAGCAGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGC 1456564 | |||| || | |||| || ||| ||||| || |||||||| | || ||||| | Sbjct 31036 GAGCCGTGTGCACG-AGATTATTCGT-GAGGCTGTGAAGATCGAGCACGAATTTGTGCGT 31093 Query 1456565 GAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGA 1456624 || || || || || | || |||||||||||| || ||||||||||||||||||||| Sbjct 31094 GATTCCCTTCCTGTTGAACTGATCGGCATGAACTCC-GCGCTCATGTGCCAGTACATTG- 31151 Query 1456625 ATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC 1456684 | ||||| || ||||| | ||| | || || || | ||| || | | Sbjct 31152 AGTTTGTTGCTGACCGTTTACTCTACTCTCT-GGGTGTGTCCAAGATTTATCACGCAAAG 31210 Query 1456685 AACCCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGC 1456744 ||||| ||| |||||||| ||||||||||| ||||||| |||||||||||||| Sbjct 31211 AACCCATTCGATTGGATGGACATGATCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAG 31270 Query 1456745 CGCGT-GGCGAGTACGCCAAGGCCGGCGT 1456772 || || || || || | ||||| ||||| Sbjct 31271 CGTGTGGGTGAATATTCGAAGGCTGGCGT 31299 >seq7003 Length=4618 Score = 102 bits (112), Expect = 1e-15 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 ||||||||| |||||||| || |||||||||| |||| ||||||| ||||||| || Sbjct 1687 CATGTCGATTATGAACTCATTCATCAACGACATTTTCGAGCGCATCGCGTCCGAGGCTGG 1628 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | || |||| | ||| ||| ||| | || |||||||||||||| || || Sbjct 1627 TAAGCTCTCGCGTTACAATAAGAAGTCCACTTTATCCAGTCGCGAGATCCAGACAGCAGT 1568 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || || ||| |||||| |||| | |||||||| || |||||||| Sbjct 1567 CCGTCTAATGTTGCCTGGCGAATTGGCAAAACACGCCGTTTCTGAGGGCAC 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175227641067332