Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq13324 145 7e-30 seq18532 129 5e-25 seq2613 84.2 2e-11 >seq13324 Length=6237 Score = 145 bits (160), Expect = 7e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||||||| | ||| |||||| || ||||||||||| || Sbjct 6129 CCACCACGAAGGCGCAGCACCAAATGCAGCGTCGACTCCTTCTGGATGTTGTAATCAGCA 6070 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || ||| |||| || || ||||| || ||||| || | ||||||||||| | ||| Sbjct 6069 AGCGTACGCCCGTCCTCTAGTTGCTTGCCAGCAAAGATTAGACGCTGCTGGTCTGGCGGA 6010 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCAC-CGTGTCGCTCGATTCCAC 35688 | | |||||||| |||||| ||||| |||| || ||||||| || ||||| Sbjct 6009 ATACCTTCCTTGTCTTGAATCTTTGCCTTCAC-GTTGTCAATCGTGTCGGACGGCTCCAC 5951 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | |||||| || || ||||||| ||||||||||| ||||||||| Sbjct 5950 ATCGAGCGTGATTGTCTTGCCCGTCAGTGTTTTCACAAAAATCTGCATT 5902 >seq18532 Length=6745 Score = 129 bits (142), Expect = 5e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||||||| |||||||| ||||||| || || | || || |||||||| || ||||| | Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTT 35665 | | ||||||||||| | || | | ||||||||| ||| ||| | ||| | | | Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCC-TGAATTTTGGCCTTAACATTG 5270 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||||| || ||||| |||| |||||| || || |||||||| || |||||| Sbjct 5271 TCAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACA 5330 Query 35726 AATATCTGCATTCTG 35740 ||||||||||| ||| Sbjct 5331 AATATCTGCATGCTG 5345 >seq2613 Length=31273 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| |||| || |||||||||||||||||| || || Sbjct 12302 CCACCACGAAGACGAAGCACCAAGTGTAGAGTCGACTCCTTTTGAATGTTGTAGTCCGCG 12243 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | | || |||| || |||||||| || ||||| |||| ||||||||||| | |||| Sbjct 12242 AGAGAACGGCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGAGGA 12183 Query 35630 A 35630 | Sbjct 12182 A 12182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450642663032880