Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq15263 123 3e-23 seq18532 109 6e-19 >seq15263 Length=38747 Score = 123 bits (136), Expect = 3e-23 Identities = 901/1427 (63%), Gaps = 52/1427 (4%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACG-GCGAAGACATTGACGCCGCCTT 7622 ||||| ||| | ||||||||||| | || |||||| | | | |||||| ||| || || Sbjct 35409 CAACAAATGATTATGCGCGTGGCGTTAGGGATTCACAAGAGCA-ACATTGCCGCGGCGTT 35351 Query 7623 GGAAACGTACCAAATGATGTCTTTGAAACAGTTT---ACGCACGCTTCGCCCACCATGTT 7679 || |||||| | | ||||| | || ||||| || ||||| |||| || | || Sbjct 35350 AGAGACGTACGAGCTCATGTC---GCAAAAGTTTTTTACCCACGCGACGCCAACGTTATT 35294 Query 7680 TGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGA 7739 | |||||| ||| | ||| |||||||||||||||||| | || | |||| || || Sbjct 35293 TAACGCGGGGACACCCCGGCCCCAATTGTCCTCGTGTTTTCTATTAGCAATGCAAGATGA 35234 Query 7740 CAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGG 7799 || || || |||||| | ||||| | || ||| ||| || |||| | ||| Sbjct 35233 TTCGATTGAAGGGATTTACGATACGCTTAAACAATGTGCCTGTATCTCTAAATGGGCCGG 35174 Query 7800 CGGAATAGG--TCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACC 7857 || ||||| || | | | | | || | || || | | || ||| | |||| Sbjct 35173 AGGGATAGGGATCAGTATGCATA--ACATTCGAGCAACCAACAGTTACATTCGGGGCACC 35116 Query 7858 AACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACAT 7917 ||||| | | || | |||||||||||||| || ||| | ||| || || Sbjct 35115 AACGGCTCCTCGAATGGGATCATTCCCATGTTGCGCGTCTTTAATGATACGGCACGGTAT 35056 Query 7918 GTAGACCA----GGGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCA 7973 || || || || |||||| ||||||||| | ||||||||| |||||||||||||| Sbjct 35055 GTGGATCAAGGCGGCGGGAAA-CGCAAAGGCTCGTTTGCCATCTACTTGGAGCCGTGGCA 34997 Query 7974 CGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGA-AGACAGCAAAG 8032 || ||| | || | | | | || ||| || ||| ||| | | Sbjct 34996 TGCCGACGTGCTCGAGTTTTTGGACTTACGGAAAAACCACGGCAACGAGTTACATC-GGG 34938 Query 8033 CGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCG 8092 | || ||| | || | | |||||| | || ||| ||||||||| |||||| | | Sbjct 34937 CACGTGATTTGTTTTATGCCTTGTGGATTCCTGATTTGTTTATGAAGCGCGTAGAAGCCA 34878 Query 8093 ACGCACAATGGTCGCTCATGTGCCCCGATCG--TTGCCCTTTATTAAAAAACGTTTACGG 8150 | | | | ||| | | || |||| || |||| | | | || | | || Sbjct 34877 ATGGAGAGTGG-AGTTTATTCTGTCCGAACGAAGCGCCCGGTTTGTACGAATG-CTGGGG 34820 Query 8151 TTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGG-CGCGTACGTGCGGCAAG 8209 | | |||||| | |||||| ||| ||||||||||| || |||| || | | | Sbjct 34819 CGCCGAGTTTGAAAACTTGTACGCACAGTACGAACACGATGGACGCGCGCGGAAGACCA- 34761 Query 8210 TGAAAGCGCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGT 8269 ||||||| | | || ||||| | || || | || || || |||||| Sbjct 34760 TGAAAGCCCAACAATTGTGGTTTGCCATCTTGGACGCCCAGATTGAGACGGGCGTGCCGT 34701 Query 8270 ACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTT 8329 |||||||||||| ||||| || ||| |||||| || | ||||| ||| Sbjct 34700 TCATGCTGTACAAGGACGCGGCGAATCGCAAGTCGAATCAACAGAATCTCGGCACGATTC 34641 Query 8330 GTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTT 8389 | | || || ||||| |||| | | |||||| ||||||| ||||||||||| | Sbjct 34640 GATCGAGTAACTTGTGCTGTGAAGTGATTGAGTACACGTCGCCCGATGAAGTGGCCGTGT 34581 Query 8390 GCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACT 8449 | || || || |||||| ||| || || || |||| | | | | | | Sbjct 34580 GTAACCTCGCATCGGTGGCGTTACCGAAATTTGTGGA-CGACCGT-----GCGTTCAATT 34527 Query 8450 TTGAACAATTGAAAAACGCCGTG--CAA----GTGACGGTACGCAATTTAGATCGCATCA 8503 || || ||||| ||| |||| ||| |||||| || || || | | | Sbjct 34526 TTCAAAAATTG---TACGACGTGACCAAAGTCGTGACG---CGAAACCTAAACAAGGTGA 34473 Query 8504 TTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCG 8563 |||||||||||| ||| ||| | | ||||| || || || ||||| || | || Sbjct 34472 TTGATGTCAATTATTACCCCGTAAAGGAAGCACGTACGTCCAATATGCGGCATCGTCCGA 34413 Query 8564 TTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAA 8623 |||| | || || || || || ||||| |||||| | | || || | || | Sbjct 34412 TTGGGATCGGGGTCCAGGGCCTTGCCGATGCGTTTATCCTCATGAATTATCCATTTGAGA 34353 Query 8624 GCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCG-CAT-T 8681 || | |||||||| | |||| || || ||||| | |||| | | ||| Sbjct 34352 GCGACGAAGCGCGGGAATTGAACAAGAAGATCTTTGAAACCATCTATTTTGCTGCCATGG 34293 Query 8682 AGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCC 8741 ||| | | | || | ||||| |||| |||| ||||||| ||| || ||| ||| Sbjct 34292 AGACGTC-GATG-GAGATTGCCAAAGAACTGGGACCGTACGAGACGTTTGCAGGCTCCCC 34235 Query 8742 TGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTC---TTTGTG 8798 ||| || || || || || | || ||||| || || || |||| ||||| Sbjct 34234 TGCGAGTAAAGGGATCTTCCAGTTTGATTTGTGGGGCGTGACACCGTCCTCAGGCTTGTG 34175 Query 8799 GAATTGGAGCGATTTGAAACGCAAAATTGCTCAA-TTCGGTTTGCGCAATTCGCTGTTGG 8857 | |||||| | ||| || | | | || |||| | ||| | ||||| ||| || | | Sbjct 34174 GGATTGGAACACATTG-AAGGAACAGGTGATCAAGTACGGGATTCGCAACTCGTTGCTCG 34116 Query 8858 TGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGC 8917 |||| |||||| || || |||| || || || | || ||||| ||||| |||| | Sbjct 34115 TGGCGCCCATGCCAACAGCTTCGACGGCGCAGATTCTTGGCAACAATGAATCGATTGAAC 34056 Query 8918 CGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTT 8964 ||| || ||| ||||| | || || ||||||||||| ||| Sbjct 34055 CGTATACGTCCAATATGTACAATCGGCGCGTCTTGGCCGGCGAGTTT 34009 >seq18532 Length=6745 Score = 109 bits (120), Expect = 6e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| |||||||||||| | | ||| | || |||||||| ||||| ||||| | Sbjct 5152 CCTTTTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGA 5211 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 | | ||||||||| || || || || ||||| || || |||||||| || || || Sbjct 5212 TTAGACGCTGCTGGTCAGGTGGGATTCCTTCCTTGTCCTGAATTTTGGCCTTAACATTGT 5271 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||||| ||||| || | || ||||| || || || || || || || | Sbjct 5272 CAATCGTGTCGGACGGCTCCACATCCAACGTGATGGTCTTGCCCGTCAAGGTCTTCACAA 5331 Query 134704 AAATTTGCAT 134713 | || ||||| Sbjct 5332 ATATCTGCAT 5341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505229179980720