Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq24131 208 1e-48 >seq24131 Length=32940 Score = 208 bits (230), Expect = 1e-48 Identities = 397/578 (69%), Gaps = 9/578 (2%) Strand=Plus/Minus Query 39638 CCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTT 39697 || || || | ||| ||||| || || || || | ||||||||||| || || |||||| Sbjct 30978 CCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGTCCAGGCATGAGCCCGCGCTTT 30919 Query 39698 TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAAT 39757 ||||||||||| |||| | |||||| || || || || |||||||| |||| |||||| Sbjct 30918 TTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATGCCTTCAACTGAGGCAAAT 30859 Query 39758 GCAACAAGTCTCTCTCCGTA--AC-TTGTATCATTATGTATCCACTTCTGTGCCCAATCA 39814 || | || | ||| |||| || | | || ||| ||| ||||||| | Sbjct 30858 GCTAACAGGCGCTCCGCGTACGACGATACACGCGGATCACACCATTTCAGTGCCCAGTTG 30799 Query 39815 GCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTT-TTCATC 39873 |||||||| || ||||| | || ||||| || ||| ||||| | | ||| | ||| Sbjct 30798 GCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACGTAAGAGGTGGTTTTTCTCCATA 30739 Query 39874 ACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAAT 39933 || ||| |||| ||| ||||| || | ||| || | ||| || || || || ||||| Sbjct 30738 AC-ATCCTTAATATACGTATCAATGAGCAGCGAGTAAACTTCGGAGTGAATATTCTCAAT 30680 Query 39934 CGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC--TGAACAAAAT 39991 ||| ||||| || |||||||| || | ||||||| ||||| || || || || | Sbjct 30679 CGCAATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGTATTTGAACTTCGTTGCTGAAGTT 30620 Query 39992 CTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGT 40051 | | |||| || |||||||| || ||||| || || ||||| || || | ||||||| Sbjct 30619 CAT--GGCCAGGTTCTCATTCACAATGCCATCGCTCGCTGCAAAGAAGGCAAGTACATGT 30562 Query 40052 TTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATA 40111 || ||||| | |||| | || | || |||||| || | || | | | | Sbjct 30561 TTGATAAAGTGACGCTCATTGTCCGTAAGATTCACCCAGTCCTTAAGGTCATGTACCAAA 30502 Query 40112 TCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCA 40171 || | || || || ||||| ||||| ||||| || || |||||||| | ||| | || Sbjct 30501 TCCAACTCCTCGGCCGTCCAGAACGAAGCCTCAGCTTTCTTGTACATCTGCCACACTTCG 30442 Query 40172 CGATATTGTATTGGAAAAATAACAAATCTATTTGGATT 40209 | | || || ||||| | ||||| | || ||||| Sbjct 30441 TGCTCCTGAATGGGAAAGAGCACAAAGCGGTTGGGATT 30404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686678805761040