Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq24131 150 1e-31 seq5719 120 2e-22 >seq24131 Length=32940 Score = 150 bits (166), Expect = 1e-31 Identities = 384/570 (67%), Gaps = 17/570 (3%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||| ||||| | || || | ||||| |||||||| ||||| |||| Sbjct 30416 TTTGTGCTCTTTCCCATTCAGGAGCACGAAGTGTGGCAGATGTACAAGAAAGCTGAGGCT 30475 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || || ||||| || || || | |||||| | ||| | || || ||| | | || Sbjct 30476 TCGTTCTGGACGGCCGAGGAGTTGGATTTGGTACATGACCTTAAGGAC--TGGGT-GAAT 30532 Query 43818 TAAAACCACAA-GAAAAACATTTTAT--ATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 | |||| || || ||||| | | | || | || || ||||| ||||||| Sbjct 30533 CTTACGGACAATGAGCGTCACTTTATCAAACAT--GTACTTGCCTTCTTTGCAGCGAGCG 30590 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGTTCAATTACCAGAA 43933 | || || || ||||| || ||| | | || |||| ||||||||| |||| ||| Sbjct 30591 ATGGCATTGTGAATGAGAACCTGGCCA-TGAACTTCAGCAACGAAGTTCAAATACCTGAA 30649 Query 43934 GCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 || || || ||||| || || || ||||| || || |||||||| || ||| | ||| Sbjct 30650 GCTCGTTGCTTTTACGGCTTCCAGATTGCGATTGAGAATATTCACTCCGAAGTTTACTCG 30709 Query 43994 CTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATA 44053 || || || |||||||| || || |||| ||||| | | | || ||| || Sbjct 30710 CTGCTCATTGATACGTATATTAAGGATGTTATGGAGAAAAACCACCTCTTACGTGCCATC 30769 Query 44054 GAAAC-AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA 44112 ||||| | | | || | | ||| | ||||| ||||||| || |||||| || | Sbjct 30770 GAAACCATTTCATGTG-TCAAAAAGAAAGCCAACTGGGCACTGAAATGGTGTGATCCGCG 30828 Query 44113 TG-AT--TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC 44169 || || || | | || || || | || ||||| || ||||||||||| || || Sbjct 30829 TGTATCGTCGTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAAGGCATTTTTTTCTC 30888 Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 ||| || ||| |||| |||||| | || || || || | |||||||| ||| || Sbjct 30889 AGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATGCCTGGACTGAGTTT 30948 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 || ||||||||||| |||||||| ||||| Sbjct 30949 CTCGAATGAGTTAATCAGTCGTGACGAAGG 30978 >seq5719 Length=28269 Score = 120 bits (132), Expect = 2e-22 Identities = 434/674 (64%), Gaps = 9/674 (1%) Strand=Plus/Plus Query 40650 TCAATATTTGGATGTCAAAATAGATACAATTTGAGAAATCA---GTTTCCGTTGCTAACT 40706 || ||||||||| || | ||| | |||| |||| | |||||||||||| || Sbjct 19613 TCGATATTTGGAGCACAGATGCGATTTAGTTTGCGAAACAATGTGTTTCCGTTGCTGACC 19672 Query 40707 ACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGT 40766 ||||| || |||||||| || | || || ||| |||| |||||||| | || Sbjct 19673 ACAAAGAAGGTGTTTTGGCGCGGTGTAGCGGAGGAATTGTTGTGGTTTATAAGTGGGGAC 19732 Query 40767 ACTAATGCTAAGAAATTATCAGAAAGAGGAG-TGCACATTTGGAATGCGCACAGTTCTAA 40825 || | ||| | | || ||| || ||| | | ||||||||| ||| | | || Sbjct 19733 ACGAGTGCGCACACGCTA-CAGCAAAAGGGGATTCACATTTGGGATGGTAATGGCTCGCG 19791 Query 40826 AACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTA 40885 | ||| || | ||| || || | || | || ||||| || ||||| || Sbjct 19792 TGAGTTCTTGGACAGTAGAGGGTTGCACTCCCGCGAGGTTGGAGATCTCGGACCTGTATA 19851 Query 40886 TGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGATTATACCAA 40945 ||| ||||| | ||| || ||||| || | ||| | |||| | | |||||||| Sbjct 19852 TGGCTTTCAATGGCGTCACTTTGGTGCCACATACACGAATATGCATGCAGATTATACTGG 19911 Query 40946 TAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCCGATCCCGATAGCCG 41005 | |||| |||| || | | || || || | | | || | ||| | ||| Sbjct 19912 TCAAGGCGTGGACCAGCTCGCGGAGGTGATTGACAAGCTCCGTTCAAACCCCAGTGACCG 19971 Query 41006 ACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTG 41065 || || | | | || ||||||||| |||| | || ||||| ||||||||||| Sbjct 19972 TCGGATTGTGCTTTCGGCTTGGAACCCAGCGGATCTCCACGAAATGGCGTTGCCACCTTG 20031 Query 41066 TCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAG 41125 ||| |||| || || || ||||| | ||||| ||||||||||| ||||||| | Sbjct 20032 TCACATGTTTTGCCAATTCTACGTGGCGGACGGTGAGTTGTCATGTCAAATGTATCAGCG 20091 Query 41126 ATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTA 41185 || | |||||||| || || || || ||||| || || || || || ||||| ||| Sbjct 20092 TTCCGCCGACATGGGGCTTGGAGTTCCCTTTAATATTGCCAGCTACGCGCTGCTTACGCG 20151 Query 41186 TATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTA--GGAGAT 41243 | |||| || || || | |||||||| || ||| || || |||| || || Sbjct 20152 CTTAGTTGCTCAAGTAACTGGGCTGAAACCTGGCGAGTTTATT--CATGTTATCGGTGAC 20209 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | |||| | || | || ||| | ||||| | | | || ||||||||| ||| | Sbjct 20210 GCACATGTGTATCTAAACCACGTGGAGCCACTTCAAAAGCAGCTGACACGAGCACCGCGT 20269 Query 41304 CCATTTCCAACGCT 41317 || || || || || Sbjct 20270 CCGTTCCCGACCCT 20283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397326248749930