Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq24131 98.7 1e-15 seq18034 87.8 2e-12 >seq24131 Length=32940 Score = 98.7 bits (108), Expect = 1e-15 Identities = 372/576 (65%), Gaps = 6/576 (1%) Strand=Plus/Minus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || ||||| ||||| ||||| || || || | | ||| | ||||| Sbjct 31285 ATATTCACCCACACGCTTTTCGAAAAAGTTGGTTTTGCCCTGGAGCGAGATCATGTCCAT 31226 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 |||| ||||||||||||| || |||| | ||| || | | ||| | ||| Sbjct 31225 CCAATCGAATGGGTTCTTTGCGTGATAAATCTTGGACACACCCAGAGAGTAGAGTAAACG 31166 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | || |||||||||||| |||| | |||||||||| ||||| || | | Sbjct 31165 GTCAGCAACAAACTCAATGTACTGGCACATGAGCGCGGAGTTCATGCCGATCAGTTCAAC 31106 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || | || | || | | ||| || | |||||| || || | || |||| Sbjct 31105 AGGAAGGGAATCACGCACAAATTCGTGCTCGATCTTCACAGCCTCACGAATAATCTCGTG 31046 Query 129967 AATG-GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACG-GCAAACTCC 130024 | | ||| || ||| | | ||| || || | | | | || ||||| || Sbjct 31045 CACACGGCTCTCTGGCAGCT-TGTTGACCAGTTTCGAGTACA-TGAGACATGCAAAGTCT 30988 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||| | ||| |||||||| ||| | ||||||||||| | ||| || |||||||| Sbjct 30987 GTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGTCCAGGCATGAGC 30928 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || ||||| || | ||| || || | |||||| || || ||||| || || || || || Sbjct 30927 CCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAAATGCCTTCAACT 30868 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGAC-TTTGTATCAAACCACTTCAT 130203 | || || || || || ||||| || | || || || | |||| |||| |||| Sbjct 30867 GAGGCAAATGCTAACAGGCGCTCCGCGTACGA-CGATACACGCGGATCACACCATTTCAG 30809 Query 130204 CGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 130263 ||||| | || || || | || ||| | | ||| | ||| || ||||| | || Sbjct 30808 TGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACGTAAGAGGTGGTT 30749 Query 130264 CTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 || || ||| || || ||| |||| ||||| Sbjct 30748 TTTCTCCATAACATCCTTAATATACGTATCAATGAG 30713 >seq18034 Length=23987 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 178883 AACCCGTGCCGATGCCTTCGGTTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 178942 |||| || || || || ||| | ||||| ||||| ||||| |||| | || ||||| Sbjct 12964 AACCTGTTCCAATCCCGTCGCTACCGTTAACGAGCACCATAGGAATGATCGGAATATACC 13023 Query 178943 AGTCTGGTTCAATCGCACGCCCGTCATCATCCAAATAATTGAGCACGGGGTCGTCCCTCG 179002 | || || ||||||| | ||||| ||||||||||| ||||| || | |||| | Sbjct 13024 ACTCAGGCTCAATCGACTGACCGTCTTCATCCAAATACTTGAGTACATCATTGTCCAGTG 13083 Query 179003 GATCAAAGATTTTACGAGCATCCCTGGT--GAGTTTTGTGAAGATGTACCTCGTTTGAGA 179060 |||| ||||| ||||| | |||| | |||||||| || || | | | Sbjct 13084 GATCGTAGATTCGACGAG--TAAGTGGTTCCAAGTTTGTGAAAATATAACGAGCACTCGC 13141 Query 179061 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACC 179099 | ||| ||||||||||| |||||||| || || ||||| Sbjct 13142 TGAATCCTTGCCACCCATCAGACGCGTACCGAACTGACC 13180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618228132434160