Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq24131 147 3e-30 seq15263 129 7e-25 >seq24131 Length=32940 Score = 147 bits (162), Expect = 3e-30 Identities = 205/285 (72%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| || | |||||||||||||| | ||||| || || ||||| |||||| || Sbjct 30713 CTCATTGATACGTATATTAAGGATGTTATGGAGAAAAACCACCTCTTACGTGCCATCGAA 30772 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATAC-AAAGTC 94790 || || | ||| | |||||||||| | ||||| |||| |||| |||| | || Sbjct 30773 ACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGAAATGGTGTGATCCGCGTGTA 30832 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || || | || ||||| || || |||||||| | ||||| || || || ||||| || Sbjct 30833 TCG-TCGTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAAGGCATTTTTTTCTCAGG 30891 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 ||| || || | || | ||||||||| ||||| || |||||||| || || | ||||| Sbjct 30892 TTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATGCCTGGACTGAGTTTCTC 30951 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 || ||| | ||| ||||||||| || | ||| ||| ||||| Sbjct 30952 GAATGAGTTAATCAGTCGTGACGAAGGTATGCACACAGACTTTGC 30996 >seq15263 Length=38747 Score = 129 bits (142), Expect = 7e-25 Identities = 903/1444 (63%), Gaps = 30/1444 (2%) Strand=Plus/Minus Query 104231 ATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTCTTGGAGACA 104290 ||| | ||||||||||| | || ||||| | |||||| | | || ||||| Sbjct 35403 ATGATTATGCGCGTGGCGTTAGGGATTCACAAGAGCAACATTGCCGCGGCGTTAGAGACG 35344 Query 104291 TACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCTGGT 104350 ||||| ||||| ||| | || | ||||| || ||||| | || || || || Sbjct 35343 TACGAGCTCATGTCGCAAAAGTTTTTTACCCACGCGACGCCAACGTTATTTAACGCGGGG 35284 Query 104351 ACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAAC 104410 ||||| | |||||| ||||| || || || | || | | || || || || | Sbjct 35283 ACACCCCGGCCCCAATTGTCCTCGTGTTTTCTATTAGCAATGCAAGATGATTCGATTGAA 35224 Query 104411 GGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGG 104470 || || || | || |||| | ||||| ||||| || ||||| || || || ||| Sbjct 35223 GGGATTTACGATACGCTTAAACAATGTGCCTGTATCTCTAAATGGGCCGGAGGGATAGGG 35164 Query 104471 ATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTCAATCA 104530 || || ||| | | |||| | || | |||||||| || || || || Sbjct 35163 ATCAGTATGCATAACATTCGAGCAACCAACAGTTACATTCGGGGCACCAACGGCTCCTCG 35104 Query 104531 GATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAA--- 104587 |||| || ||||| ||| | ||||| ||||| | || || || ||||| ||||| Sbjct 35103 AATGGGATCATTCCCATGTTGCGCGTCTTTAATGATACGGCACGGTATGTGGATCAAGGC 35044 Query 104588 GCTGGGCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATG 104647 | ||| || || || || | || |||| | ||||| ||||| || || | | Sbjct 35043 GGCGGGAAACGCAAAGGCTCGTTTGCCATCTACTTGGAGCCGTGGCATGCCGACGTGCTC 34984 Query 104648 GAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTC 104707 ||||| | || || || ||||| || ||||| ||| || ||| | || Sbjct 34983 GAGTTTTTGGACTTACGGAAAAACCACGGCAACGAGTTACATCGGGCACGTGATTTGTTT 34924 Query 104708 TCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCT 104767 | || | |||||||| ||| | || |||||| | || || | | ||| | ||| | Sbjct 34923 TATGCCTTGTGGATTCCTGATTTGTTTATGAAGCGCGTAGAAGCCAATGGAGAGTGGAGT 34864 Query 104768 CTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCG-ATGCCGTGGGTGAGGAGTTTGAAGC 104826 | || ||||| || | || || ||| | | || |||| | ||| | ||||||||| Sbjct 34863 TTATTCTGTCCGAACGAAGCGCCCGGTTTGTACGAATGCTG-GGGCGCCGAGTTTGAAAA 34805 Query 104827 CCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGT 104886 | | ||| || ||||||| | || || || ||| ||| || ||| | | Sbjct 34804 CTTGTACGCACAGTACGAACACGATGGACGCGCGCGGAAGACCATGAAAGCCCAACAATT 34745 Query 104887 GTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGA 104946 |||| || || | | | || | ||||| || || | |||||| ||||| || Sbjct 34744 GTGGTTTGCCATCTTGGACGCCCAGATTGAGACGGGCGTGCCGTTCATGCTGTACAAGGA 34685 Query 104947 CGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA-TCAA--GAGTTCCAATCT 105003 ||| || | ||| |||||| ||||| | || || || | |||| || | Sbjct 34684 CGCGGCGAATCGCAAGTCGAATCAACAGAATCTCGGCACGATTCGATCGAGT---AACTT 34628 Query 105004 CTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATC 105063 || ||| | | || | || ||||| ||| ||||||||||||||||| Sbjct 34627 GTGCTGTGAAGTGATTGAGTACACGTCGCCCGATGAAGTGGCCGTGTGTAACCTCGCATC 34568 Query 105064 AATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCA 105123 | || | || || | |||||| ||| | | || ||| | ||||| | | Sbjct 34567 GGTGGCGTTACCGAAATTTGTGGA-----CGACCGTG-CGTTCAATTTTCAAAAATTGTA 34514 Query 105124 CGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCC 105183 ||| || || ||| || || ||||||||||| || |||||| |||| |||||| Sbjct 34513 CGACGTGACCAAAGTCGTGACGCGAAACCTAAACAAGGTGATTGATGTCAATTATTACCC 34454 Query 105184 CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGG 105243 ||| || || |||| || |||||| | || ||||| ||||| |||| || ||||| Sbjct 34453 CGTAAAGGAAGCACGTACGTCCAATATGCGGCATCGTCCGATTGGGATCGGGGTCCAGGG 34394 Query 105244 TCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAAT 105303 || || |||| || || || | ||||||| |||||||||| |||| | Sbjct 34393 CCTTGCCGATGCGTTTATCCTCATGAATTATCCATTTGAGAGCGACGAAGCGCGGGAATT 34334 Query 105304 CAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAG-TTGG 105362 || | || ||||| ||||| ||| || || | ||| || ||| ||| Sbjct 34333 GAACAAGAAGATCTTTGAAACCATCTATTTTGCTGCCATGGAGACGTCGATGGAGATTGC 34274 Query 105363 CAGAG-GTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 105421 || || || || || || || || |||| || || || || ||||| | | Sbjct 34273 CAAAGAACTG--GGACCGTACGAGACGTTTGCAGGCTCCCCTGCGAGTAAAGGGATCTTC 34216 Query 105422 CAATTTGATATGTGGGAAGGTGAGAC------CAAGCTTCACTACGACTGGGAAGCTCTC 105475 || |||||| |||||| |||| || || |||| | || ||| | | | Sbjct 34215 CAGTTTGATTTGTGGG-GCGTGACACCGTCCTCAGGCTT--GTGGGATTGGAACACATTG 34159 Query 105476 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACA 105535 ||||||| | | || | || |||| ||| | ||| |||| || ||||||||| Sbjct 34158 AAGGAACAGGTGATCAAGTACGGGATTCGCAACTCGTTGCTCGTGGCGCCCATGCCAACA 34099 Query 105536 GCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATC 105595 || || || || || || | || || ||||||| ||||||| || ||| | || || Sbjct 34098 GCTTCGACGGCGCAGATTCTTGGCAACAATGAATCGATTGAACCGTATACGTCCAATATG 34039 Query 105596 TATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGAC 105655 || | | | | || || |||||| |||||| ||||| || | || |||| Sbjct 34038 TACAATCGGCGCGTCTTGGCCGGCGAGTTTACGATTGTGAACAAATATTTGATGAATGAG 33979 Query 105656 CTCA 105659 |||| Sbjct 33978 CTCA 33975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583065509702640