Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq15263 192 6e-44 seq24131 132 5e-26 >seq15263 Length=38747 Score = 192 bits (212), Expect = 6e-44 Identities = 1074/1699 (63%), Gaps = 50/1699 (3%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||||| || ||| || ||||| || || ||||||||||| || | || ||| Sbjct 35349 GAGACGTACGAGCTCATGTCGCAAAAGTTTTTTACCCACGCGACGCCAACGTTATTTAAC 35290 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || | || || |||| ||||| ||| | || ||| | ||||| Sbjct 35289 GCGGGGACACCCCGGCCCCAATTGTCCTCGTGTTTTCTATTAGCAATGCAAGATGATTCG 35230 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| || || ||||| ||||| || | || || ||||| || ||| |||| || Sbjct 35229 ATTGAAGGGATTTACGATACGCTTAAACAATGTGCCTGTATCTCTAAATGGGCCGGAGGG 35170 Query 19346 ATCGGGATCCAC-TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGG---ACGAA 19401 || |||||| ||| || || || | | ||| | || | || || || Sbjct 35169 ATAGGGATCAGTATGCAT-AACATTCGAGCAACCA--ACAGTTA-CATTCGGGGCACCAA 35114 Query 19402 CGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461 ||| | | || ||| | || ||| | |||||||| || | ||||| |||| || Sbjct 35113 CGGCTCCTCGAATGGGATCATTCCCATGTTGCGCGTCTTTAATGATACGGCACGGTATGT 35054 Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521 | || || ||||| |||||||| |||||||| ||||||||| | ||||| ||||| || Sbjct 35053 GGATCAAGGCGGCGGGAAACGCAAAGGCTCGTTTGCCATCTACTTGGAGCCGTGGCATGC 34994 Query 19522 GGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGG-AGATGCGCTGTC 19580 ||||| | || || | || | || ||||| || ||||| | || || | Sbjct 34993 CGACGTGCTCGAGTTTTTGGACTTACGGAAAAACCACGGCAACGAGTTACAT-CGGGCAC 34935 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGG--A 19638 | || | || |||||||||||||| || | || ||| || || ||||| | Sbjct 34934 GTGATTTGTTTTATGCCTTGTGGATTCCTGATTTGTTTATGAAGCGCGT--AGAAGCCAA 34877 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 | ||| ||| | | || ||| ||||| || || | ||| || |||| Sbjct 34876 TGGAGAGTGGAGTTTATTCTGTCCGAACGAAGCGCCCGGTTTGTACGAATGCTGGGGCGC 34817 Query 19699 GGCGTTCAATGAGTTGTACCGGACT-TACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCC 19757 | ||| | | |||||| | || |||| | | | || || |||| | Sbjct 34816 CGAGTTTGAAAACTTGTAC-GCACAGTACGAACACGATGGACGCGCGCGGAAGACCATGA 34758 Query 19758 GGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACA 19817 |||| | | ||| | || | | |||| | ||||| ||| |||| || Sbjct 34757 AAGCCCAACAATTGTGGTTTGCCATCTTGGACGCCCAGATTGAGACGGGCGTGCCGTTCA 34698 Query 19818 TGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGT 19877 || ||||||||||| ||||| |||||| ||||| |||| ||||| |||| | Sbjct 34697 TGCTGTACAAGGACGCGGCGAATCGCAAGTCGAATCAACAGAATCTCGGCACGATTCGAT 34638 Query 19878 CGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTA 19937 || ||| |||| |||| | || ||| | ||| || || |||||||||| Sbjct 34637 CGAGTAACTTGTGCTGTGAAGTGATTGAGTACACGTCGCCCGATGAAGTGGCCGTGTGTA 34578 Query 19938 ATCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCTCCTCCTTCGACTTTGCCAAAT 19997 | || || || || | |||| || || | | | | ||| | ||| |||| Sbjct 34577 ACCTCGCATCGGTGGCGTTACCGAAATTTGTGGACGACCGTGCGTTCAATTTTCAAAAAT 34518 Query 19998 TGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTT 20057 ||||||| |||||| ||||| ||||| || || || || || ||| || | || Sbjct 34517 TGTACGACGTGACCAAAGTCGTGACGCGAAACCTAAACAAGGTGATTGATGTCAATTATT 34458 Query 20058 ACCCGACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCC 20117 |||| ||| || || | ||| |||||||| || || ||||| | |||||| |||| Sbjct 34457 ACCCCGTAAAGGAAGCACGTACGTCCAATATGCGGCATCGTCCGATTGGGATCGGGGTCC 34398 Query 20118 AGGGCCTGGCCGA--CGTTT----TCATG-ATGCTCGGCCTCTCATTCGACGATC-CCAA 20169 ||||||| ||||| ||||| ||||| || || |||| || || | | | Sbjct 34397 AGGGCCTTGCCGATGCGTTTATCCTCATGAATTATC-------CATTTGA-GAGCGACGA 34346 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 ||||| || | |||||| ||||| || || | || || ||| | | || Sbjct 34345 AGCGCGGGAATTGAACAAGAAGATCTTTGAAACCATCTATTTTGCTGCCATGGAGACGTC 34286 Query 20230 GTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGA 20289 | || | |||||||| || |||||||||||||| || || || ||| | Sbjct 34285 GATGGAGATTGCCAAAGAACTGGGACCGTACGAGACGTTTGCAGGCTCCCCTGCGAGTAA 34226 Query 20290 GGGTATCCTCCAGCCGGACATGTGGGGCGTCA-------CTGAGAAT--GAGTTTTGGAG 20340 || ||| ||||| || |||||||||| | || || | | ||||| Sbjct 34225 AGGGATCTTCCAGTTTGATTTGTGGGGCGTGACACCGTCCTCAGGCTTGTGGGATTGGAA 34166 Query 20341 CGCCCTCAAGG---TTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 | | | |||| | ||||||| ||||| ||||||||||||||||||| ||||| Sbjct 34165 CACATTGAAGGAACAGGTGATCAAG---TACGGGATTCGCAACTCGTTGCTCGTGGCGCC 34109 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 |||||| || || ||||| || ||||| | || ||||| || | | || ||||| || Sbjct 34108 CATGCCAACAGCTTCGACGGCGCAGATTCTTGGCAACAATGAATCGATTGAACCGTATAC 34049 Query 20458 GACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCT 20517 | |||| || ||| || || ||||||| ||||| || || ||||| | | Sbjct 34048 GTCCAATATGTACAATCGGCGCGTCTTGGCCGGCGAGTTTACGATTGTGAACAAATATTT 33989 Query 20518 GGTCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCG 20577 | | || | | ||| | ||| |||| || | || ||||| | | Sbjct 33988 GATGAATGAGCTCATTGATCTCGGCCTTTGGACGCCTGAAGTGCGCAACCAAATTTTGCA 33929 Query 20578 AGCCGGCGGGAGCGTCCAGGCATTG---GATATCCCCCAGAACCTCAAGGACATTTACAG 20634 | ||| ||| ||| || | || | || |||| || ||||||| | |||| Sbjct 33928 CGACGGTGGGTCCGTACAAAAAGTGAAAAACATTCCCCCTCACGTCAAGGAAAAGTACAA 33869 Query 20635 GACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTA 20694 ||| || |||||||| ||| ||| | | |||| | ||||||||||| ||||| || Sbjct 33868 GACAGTGTGGGAAATTAAACAAAAGGCCGTGCTCGATCTTGCGGCCGATCGTGGCGCGTA 33809 Query 20695 CATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAG 20754 ||| ||| |||||||| || | || | | |||| | || || | Sbjct 33808 CATTTGTCAGAGTCAGTCGCTAAACATTCATATTGCCGACCCGACGATTAGTAAACTCAC 33749 Query 20755 CTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGAC 20814 |||||||| | |||| ||| | ||||| || || ||||||||||||||| | ||| Sbjct 33748 GTCCATGCACTTTTACGCATGGAAAAAGGGACTGAAAACGGGCATGTACTATTTACGGGG 33689 Query 20815 CCGAGCCAAGGCCAAGGCG 20833 ||| |||| ||| | ||| Sbjct 33688 TCGACCCAAAGCCGATGCG 33670 Score = 136 bits (150), Expect = 4e-27 Identities = 276/405 (68%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 79437 CTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTC 79496 ||||| ||| ||||| || | || | ||| || | | |||||| ||||||||||| Sbjct 34948 CTCGTTGCCGTGGTTTTTCCGTAAGTCCAAAAACTCGAGCACGTCGGCATGCCACGGCTC 35007 Query 79497 CAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGT 79556 || |||||||| ||||| || ||||| || |||||||| || | || ||||| ||||| Sbjct 35008 CAAGTAGATGGCAAACGAGCCTTTGCGTTTCCCGCCGCCTTGATCCACATACCGTGCCGT 35067 Query 79557 GTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGT--CCCGTTG 79614 | || || || || | |||||| | ||| || | | | |||||| || |||| Sbjct 35068 ATCATTAAAGACGCGCAACATGGGAATGATCCCATTCGAGGAGCCGTTGGTGCCCCGAAT 35127 Query 79615 ATTCGTGTACCGCTCGCCCGAATGTTCGAGCA-GTGGATTCCGATGCCCCCGGACCACTT 79673 | ||| | | || |||||||| ||| ||| || || || |||| ||| || Sbjct 35128 GTAACTGT--TGGTTGCTCGAATGTT-ATGCATACTGATCCCTATCCCTCCGGCCCATTT 35184 Query 79674 GGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 79733 ||||| || || | || ||||| ||||| || || || ||||| || || | ||| Sbjct 35185 AGAGATACAGGCACATTGTTTAAGCGTATCGTAAATCCCTTCAATCGAATCATCTTGCAT 35244 Query 79734 AGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGG 79793 || | || || || |||| || || | || || ||||| || | || || Sbjct 35245 TGCTAATAGAAAACACGAGGACAATTGGGGCCGGGGTGTCCCCGCGTTAAATAACGTTGG 35304 Query 79794 CGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 ||||||||| || || |||||||| ||| || ||||||||||| Sbjct 35305 CGTCGCGTGGGTAAAAAACTTTTGCGACATGAGCTCGTACGTCTC 35349 >seq24131 Length=32940 Score = 132 bits (146), Expect = 5e-26 Identities = 544/845 (64%), Gaps = 21/845 (2%) Strand=Plus/Plus Query 59593 TGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACC 59652 |||| |||||||| | ||| |||||| | | ||||||| | || | | |||| Sbjct 30456 TGTACAAGAAAGCTGAGGCTTCGTTCTGGACGGCCGAGGAGTTGGATTTGGTACATGACC 30515 Query 59653 TGAAGGATTGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCT 59712 | ||||| |||| || || | || | |||| || || ||||| || || |||| Sbjct 30516 TTAAGGACTGGGTGAATCTTACGGACAATGAGCGTCACTTTATCAAACATGTACTTGCCT 30575 Query 59713 TCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATG 59772 |||| || ||||| ||||| ||||||| || || | | ||||||||| ||| || | Sbjct 30576 TCTTTGCAGCGAGCGATGGCATTGTGAATGAGAACCTGGCCATGAACTTCAGCAACGAAG 30635 Query 59773 TCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACT 59832 | || || | || || || | || |||| | ||| | ||| ||| |||| Sbjct 30636 TTCAAATACCTGAAGCTCGTTGCTTTTACGGCTTCCAGATTGCGATTGAGAATATTCACT 30695 Query 59833 CCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTC 59892 |||| |||||||| | || |||| || | |||||| ||||| | Sbjct 30696 CCGAAGTTTACTCGCTGCTCATTGATACGTATATTAAGGATGTTATGGAGAAAAACCACC 30755 Query 59893 TGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGT 59952 | || |||||||| || || | || ||| | ||||| | ||||| || | | Sbjct 30756 TCTTACGTGCCATCGAAACCATTTCATGTGTCAAAAAGAAAGCCAACTGGGCACTGAAAT 30815 Query 59953 GGA-TGAGTCC---TGGAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAA 60008 || ||| ||| || | | || | || | || || |||| ||||| | || ||| Sbjct 30816 GGTGTGA-TCCGCGTGTATCGTCGTACGCGGAGCGCCTGTTAGCATTTGCCTCAGTTGAA 30874 Query 60009 GGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATG 60068 || || || ||||| || || || ||| | || || |||||||||||||| || |||||| Sbjct 30875 GGCATTTTTTTCTCAGGTTCTTTTTGTTCCATCTTTTGGCTCAAAAAGCGCGGGCTCATG 30934 Query 60069 CCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTT 60128 || || ||||||||||| || ||| | || || ||||| || | || || ||| Sbjct 30935 CCTGGACTGAGTTTCTCGAATGAGTTAATCAGTCGTGACGAAGGTATGCACACAGACTTT 30994 Query 60129 GCAGTGACGC-TCTATTCACACCTATTGGAAAAATGCCCTTCCAAGGA----TATTCACA 60183 ||| || | | | || || | || | | || || ||| || | | ||| Sbjct 30995 GCA-TGTCTCATGTACTCGAAACTGGTCAACAA----GCTGCCAGAGAGCCGTGTGCACG 31049 Query 60184 AGATTGTTCAGTGGGCTTGTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGC 60242 ||||| ||| ||| | ||||||| | ||| ||| || | || | ||||| Sbjct 31050 AGATTATTC-GTGAGGCTGTGAAGATCGAGCACGAATTTGTGCGTGATTCCCTTCCTGTT 31108 Query 60243 AAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGC 60302 |||| || || ||| || | | ||| ||||||||| ||||||| || ||||| Sbjct 31109 GAACTGATCGGCATGAACTCCGCGCTCATGTGCCAGTACATTGAGTTTGTTGCTGACCG- 31167 Query 60303 CTCATGGCCCAGTTTGGAGAAGGACCA--ATTTACGGCGTGAATAACCCTTTCGACTGGA 60360 | | | | ||| | | ||| ||||| || || ||||| ||||| |||| Sbjct 31168 TTTACTCTACTCTCTGG-GTGTGTCCAAGATTTATCACGCAAAGAACCCATTCGATTGGA 31226 Query 60361 TGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTATT 60420 |||| | |||||| | | || || |||||||| || || ||||| || || || |||| Sbjct 31227 TGGACATGATCTCGCTCCAGGGCAAAACCAACTTTTTCGAAAAGCGTGTGGGTGAATATT 31286 Query 60421 CAAAG 60425 | ||| Sbjct 31287 CGAAG 31291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548341140183840