Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq15263 143 3e-29 seq24131 138 1e-27 seq18034 113 5e-20 seq13933 89.7 6e-13 seq15733 84.2 2e-11 >seq15263 Length=38747 Score = 143 bits (158), Expect = 3e-29 Identities = 257/373 (69%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| ||||||| ||||| ||||| |||||||| | || ||| Sbjct 35349 GAGACGTACGAGCTCATGTCGCAAAAGTTTTTTACCCACGCGACGCCAACGTTATTTAAC 35290 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || | || || |||| || || || | || ||| | ||||| ||| Sbjct 35289 GCGGGGACACCCCGGCCCCAATTGTCCTCGTGTTTTCTATTAGCAATGCAAGATGATTCG 35230 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || || ||||| ||||| || | |||||| ||||| || ||| | || || Sbjct 35229 ATTGAAGGGATTTACGATACGCTTAAACAATGTGCCTGTATCTCTAAATGGGCCGGAGGG 35170 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 || || ||| ||| ||| | || || | | || || ||| || ||||| Sbjct 35169 ATAGGGATCAGTATGCAT-AACATTCGAGCAACCAACAGTTACATTCGGGGCACCAACGG 35111 Query 53482 CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAA 53541 | | | |||| ||| | || ||| | |||||||| || | ||||| ||||| || | Sbjct 35110 CTCCTCGAATGGGATCATTCCCATGTTGCGCGTCTTTAATGATACGGCACGGTATGTGGA 35051 Query 53542 CCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGA 53601 || || || ||||| ||||| || ||||| ||||||||| | ||||||||||| ||||| Sbjct 35050 TCAAGGCGGCGGGAAACGCAAAGGCTCGTTTGCCATCTACTTGGAGCCGTGGCATGCCGA 34991 Query 53602 CATTATGGAGTTT 53614 | | | |||||| Sbjct 34990 CGTGCTCGAGTTT 34978 Score = 104 bits (114), Expect = 3e-17 Identities = 305/464 (66%), Gaps = 7/464 (2%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||||||||||| |||||||| || |||||||| ||||| | |||||| Sbjct 34131 CGCAACTCGTTGCTCGTGGCGCCCATGCCAACAGCTTCGACGGCGCAGATTCTTGGCAAC 34072 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || || || | || ||||| ||| |||| || ||| || || | | || || ||| Sbjct 34071 AATGAATCGATTGAACCGTATACGTCCAATATGTACAATCGGCGCGTCTTGGCCGGCGAG 34012 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGA-ACCC 55662 ||| || | ||||| | | | || || || | || | |||| || Sbjct 34011 TTTACGATTGTGAACAAATATTTGATGAATGAGCTCATTGATCTCGGCCTTTGGACGCCT 33952 Query 55663 GCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAGATTCC 55719 | || | || | ||| ||| |||| |||||||| || || || | ||||| Sbjct 33951 GAAGTGCGCAAC-CAAATTTTGCACGACGGTGGGTCCGTACAAAAAGTGAAAAACATTCC 33893 Query 55720 TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGA 55779 | | ||||||| | ||| ||| |||||||| ||| ||| ||| || | || Sbjct 33892 CCCTCACGTCAAGGAAAAGTACAAGACAGTGTGGGAAATTAAACAAAAGGCCGTGCTCGA 33833 Query 55780 -CATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | || | || |||||||| |||||||| ||| ||||| || ||||| || | Sbjct 33832 TCTTGCG-GCCGATCGTGGCGCGTACATTTGTCAGAGTCAGTCGCTAAACATTCATATTG 33774 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 | || | | || | | || ||||||||||||| ||||| |||||||| | Sbjct 33773 CCGACCCGACGATTAGTAAACTCACGTCCATGCACTTTTACGCATGGAAAAAGGGACTGA 33714 Query 55899 AGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 | ||||| ||||||||| | ||| || |||| ||| | ||| Sbjct 33713 AAACGGGCATGTACTATTTACGGGGTCGACCCAAAGCCGATGCG 33670 >seq24131 Length=32940 Score = 138 bits (152), Expect = 1e-27 Identities = 531/824 (64%), Gaps = 25/824 (3%) Strand=Plus/Minus Query 74456 CTTTGAATAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTT 74515 ||| ||||| ||||| || |||||||| ||||||||||| || || | | |||||| | Sbjct 31291 CTTCGAATATTCACCCACACGCTTTTCGAAAAAGTTGGTTTTGCCCTGGAGCGAGATCAT 31232 Query 74516 CTCCATCCAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCAT 74575 |||||||| ||||| ||||||||||| ||||| ||| | || | | | Sbjct 31231 GTCCATCCAATCGAATGGGTTCTTTGCGTGATAAAT---CTTGGACACACCCAGAGAGTA 31175 Query 74576 GAGG---CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGAT 74632 ||| || || || ||||| | ||||||||| ||| | | | ||||||||| Sbjct 31174 GAGTAAACGGTCAGCAACAAACTCAATGTACTGGCACATGAGCGCGGAGTTCATGCCGAT 31115 Query 74633 GAGTTTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGAC 74692 |||| || || | || | ||| || ||| | || |||| | | Sbjct 31114 CAGTTCAACAGGAAGGGAATCACGCACAAATTCGTGCTCGATCTTCACAGCCTCACGAAT 31055 Query 74693 AATCTTGTGAATG----TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAA-GCGTC 74747 ||||| ||| | ||| ||| || ||| | ||| | ||||| | | | | Sbjct 31054 AATCTCGTGCACACGGCTCTCTGGCAG----CTTGTTGACCAGTTTCGAGTACATGAGAC 30999 Query 74748 ACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGG 74807 | | |||| || ||| ||||| || | || || || |||||||| || || Sbjct 30998 ATG-CAAAGTCTGTGTGCATACCTTCGTCACGACTGATTAACTCATTCGAGAAACTCAGT 30940 Query 74808 CCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAG 74867 |||||||| || || ||||| || | ||||||||||| ||| || ||||| ||| || Sbjct 30939 CCAGGCATGAGCCCGCGCTTTTTGAGCCAAAAGATGGAACAAAAAGAACCTGAGAAAAAA 30880 Query 74868 ATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG---CAT-CGGAAGT 74923 |||||||| || | ||||| || | ||||| | |||| ||| | || |||| Sbjct 30879 ATGCCTTCAACTGAGGCAAATGCTAACAGGCGCTCCGCGTACGACGATACACGCGGATCA 30820 Query 74924 CATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTG 74983 || ||| || | ||||| | ||||| |||||| | | || ||||| || | Sbjct 30819 CA-CCATTTCAGTGCCCAGTTGGCTTTCTTTTTGACACATGAAATGGTTTCGATGGCACG 30761 Query 74984 GAAGAGGCTTGCCTTCTCTTCGGGA--TCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||||| || || ||| | | ||||| | | | ||||| | || ||||| Sbjct 30760 TAAGAGG--TGGTTTTTCTCCATAACATCCTTAATATACGTATCAATGAGCAGCGAGTAA 30703 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 || || ||||| ||| | |||| | |||| || | || || || | Sbjct 30702 ACTTCGGAGTGAATATTCTCAATCGCAATCTGGAAGCCGTAAAAGCAACGAGCTTCAGGT 30643 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 || || || || || || |||||| | | ||||| | || ||||| || || Sbjct 30642 ATTTGAACTTCGTTGCTGAAGTTCATGGCCAGGTTCTCATTCACAATGCCATCGCTCGCT 30583 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAA 75221 || || || || ||||| |||||||||||| ||||||| ||| || || || |||| Sbjct 30582 GCAAAGAAGGCAAGTACATGTTTGATAAAGTGACGCTCATTGTCCGTAAGATTCACCCAG 30523 Query 75222 TCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||||| ||||| ||||||| | ||||||| |||||||||| Sbjct 30522 TCCTTAAGGTCATGTACCAAATCCAACTCCTCGGCCGTCCAGAA 30479 >seq18034 Length=23987 Score = 113 bits (124), Expect = 5e-20 Identities = 235/350 (67%), Gaps = 0/350 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 || ||||| || || || ||| || | || | ||| || | || |||| || || Sbjct 12966 CCTGTTCCAATCCCGTCGCTACCGTTAACGAGCACCATAGGAATGATCGGAATATACCAC 13025 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 |||||||| | | | ||||||| || | |||||||| || ||||||| ||| Sbjct 13026 TCAGGCTCAATCGACTGACCGTCTTCATCCAAATACTTGAGTACATCATTGTCCAGTGGA 13085 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 ||| | || || ||| | | | |||||||| ||||||| || || | | Sbjct 13086 TCGTAGATTCGACGAGTAAGTGGTTCCAAGTTTGTGAAAATATAACGAGCACTCGCTGAA 13145 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 ||||||||||| |||||||||||||| || || | ||| || |||| | |||| Sbjct 13146 TCCTTGCCACCCATCAGACGCGTACCGAACTGACCGATTGGCGACAGAAGGTGAATGTTG 13205 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 ||| || ||||| | ||| |||| || || || |||||| | || ||| ||| Sbjct 13206 TTGCTTCCGACAAAATCTTGTGCCATATTCACGATACAACCTTGCAAACTTTGCTCGCCA 13265 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 || ||||| || | ||||| | ||||||||| || || || || ||||| Sbjct 13266 TGATGATAAGCAGAATGCTCAGACACGTAGCCAGCGAGTTGGGCAACCTT 13315 >seq13933 Length=9952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||| ||||| || || | ||||||||||| || || ||| | ||||||||||| | Sbjct 4019 GCGTAAAGATATACCGTGGACTGGCCGCATCTTTACCGCCTTGTAAACGCGTTCCAAATT 3960 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | ||| || ||| || ||||| || ||||||| || |||| || | Sbjct 3959 GACCCGATGGATAGAGAAGTGGGAGATTATTGGCCCCGACGAAATCTTGGGCCATGTTGA 3900 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 |||||| |||| |||||| ||||| ||||| || || || || | || | Sbjct 3899 TAATCGTCGAATGCAACGACGCTTCCCCGTGATGATATGCTGTGTGTTCACTGCAATAGC 3840 Query 152207 CCGCCAACTGCGCCACCTT 152225 | |||||||| || || || Sbjct 3839 CTGCCAACTGGGCGACGTT 3821 >seq15733 Length=3381 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 152027 GCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 |||| ||||| || || | ||||||||||| || || ||| | ||||||||||| | Sbjct 2251 GCGTAAAGATATACCGTGGACTGGCCGCATCTTTACCGCCTTGTAAACGCGTTCCAAATT 2192 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || || | ||| || ||| || ||||| || ||||||| || |||| || | Sbjct 2191 GACCCGATGGATAGAGAAGTGGGAGATTATTGGCCCCGACGAAATCTTGGGCCATGTTGA 2132 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTC 152195 |||||| |||| |||||| ||||| ||||| || || || || Sbjct 2131 TAATCGTCGAATGCAACGACGCTTCCCCGTGATGATATGCTGTGTGTTC 2083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547032778402800