Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerospora_20graminicola_20[genbank_20GCA_5F001887855.2_202017-04- 05] 26,786 sequences; 299,901,251 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13324 163 3e-35 seq18532 149 7e-31 seq15263 113 5e-20 seq2613 104 3e-17 >seq13324 Length=6237 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || |||||||| || || || || || ||| | Sbjct 5902 AATGCAGATTTTTGTGAAAACACTGACGGGCAAGACAATCACGCTCGATGTGGAGCCGTC 5961 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| || ||||| |||||||| || ||||| |||||||| Sbjct 5962 CGACACGATTGACAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCGCCAGACCA 6021 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||||||| |||||||| |||||||| ||||| | ||||| || || || || || Sbjct 6022 GCAGCGTCTAATCTTTGCTGGCAAGCAACTAGAGGACGGGCGTACGCTTGCTGATTACAA 6081 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || ||| | || |||| ||||| ||||| Sbjct 6082 CATCCAGAAGGAGTCGACGCTGCATTTGGTGCTGCGCCTTCGTGGTGG 6129 >seq18532 Length=6745 Score = 149 bits (164), Expect = 7e-31 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | || |||||||| || || | || || ||| | Sbjct 5341 ATGCAGATATTTGTGAAGACCTTGACGGGCAAGACCATCACGTTGGATGTGGAGCCGTCC 5282 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||||| ||||||||||||||||| ||||| || || |||||| Sbjct 5281 GACACGATTGACAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATCCCACCTGACCAG 5222 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||||||||| |||||||| ||||| |||||||||| || || || || ||||| || Sbjct 5221 CAGCGTCTAATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACACTGGCCGACTACAAC 5162 Query 27586 GTCCAAAAGG 27595 ||||||||| Sbjct 5161 ATCCAAAAGG 5152 >seq15263 Length=38747 Score = 113 bits (124), Expect = 5e-20 Identities = 664/1045 (64%), Gaps = 35/1045 (3%) Strand=Plus/Plus Query 80040 CCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACT 80099 ||| | ||||||||||||||| || || ||||| ||||| |||| | |||||| || | Sbjct 33691 CCGTAAATAGTACATGCCCGTTTTCAGTCCCTTTTTCCATGCGTAAAAGTGCATGGACGT 33750 Query 80100 GAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAA 80159 ||| || || || |||| | || ||||| || |||||| |||||| ||| | Sbjct 33751 GAGTTTACTAATCGTCGGGTCGGCAATATGAATGTTTAGCGACTGACTCTGACAAATGTA 33810 Query 80160 AGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACG 80219 || |||||||| ||||| | || | | | ||||||| ||||||||| ||||| Sbjct 33811 CGCGCCACGATCGGCCGCAAGATCGAGCACGGCCTTTTGTTTAATTTCCCACACTGTCTT 33870 Query 80220 ATAC---ACCTTACGAAGCTCCTCTGGAATG---TCCAGATTTTGCACACTGCCACCGTC 80273 ||| |||| || | | |||||| | || ||||| || |||||||| Sbjct 33871 GTACTTTTCCTT--GACG-TGAGGGGGAATGTTTTTCACTTTTTGTACGGACCCACCGTC 33927 Query 80274 CTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCAC 80333 | | |||||| || || ||||| |||||| | || || | || || |||| Sbjct 33928 GTGCAAAATTTGGTTGCGCACTTCAGGCGTCCAAAGGCCGAGATCAATGAGCTCATTCAT 33987 Query 80334 AAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGT 80393 | | ||||| | || |||||| || || | | ||| || |||| || | Sbjct 33988 CAAATATTTGTTCACAATCGTAAACTCGCCGGCCAAGACGCGCCGATTGTACATATTGGA 34047 Query 80394 AGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453 || || || |||| | || ||||| || || ||||| ||||| || || ||||| Sbjct 34048 CGTATACGGTTCAATCGATTCATTGTTGCCAAGAATCTGCGCCGTCGAAGCTGTTGGCAT 34107 Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTG- 80512 || | || | || || || || | |||| ||| | | | || | ||| || Sbjct 34108 GGGCGCCACGAGCAACGAGTTGCGAATCCCGTACTTGATCACCTGTTC-CTTCAATGTGT 34166 Query 80513 ACCAA-AAATCAACCC---CAACGCTGTGA--CCCCACATGTCGTGCTGCAAGATGCCCT 80566 |||| ||| || ||| ||| | ||||||| || ||| ||||| || | Sbjct 34167 TCCAATCCCACAAGCCTGAGGACGGTGTCACGCCCCACAAATCAAACTGGAAGATCCCTT 34226 Query 80567 CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTC---AC 80623 ||| || || || || |||||||||||||| ||| ||||| | ||| Sbjct 34227 TACTCGCAGGGGAGCCTGCAAACGTCTCGTACGGTCCCAGTTCTTTGGCAATCTCCATCG 34286 Query 80624 ACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCG 80683 ||| |||||| ||| || ||| ||| ||||||| |||||||| | |||| Sbjct 34287 ACGTCTCCAT---GGCAGCAAAATAGATGGTTTCAAAGATCTTCTTGTTCAATTCCCGCG 34343 Query 80684 CCT-GTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACG 80742 | | || | || || || | | ||| | || ||| | || || |||||||| || Sbjct 34344 CTTCGTCGCTC-TCAAATGGATAATTCATGAGGATAAACGCATCGGCAAGGCCCTGGACC 34402 Query 80743 CCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG-GCCTCCGGAATTGGGTAAAA 80801 ||||| | ||||| || || ||| | || || || || || ||| | |||||| | Sbjct 34403 CCGATCCCAATCGGACGATGCCGCATATTGGA-CGTACGTGCTTCCTTTACGGGGTAATA 34461 Query 80802 GTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTT 80861 || ||| || || ||| ||||| || || || || || || || | | ||| Sbjct 34462 ATTGACATCAATCACCTTGTTTAGGTTTCGCGTCACGACTTTGGTCACGTCGTACAATTT 34521 Query 80862 CTGAAAGTCGAA---TTGGTTCCCCTTCACAAATGCCGG-AAGGCTCAGGGACGCCAGAT 80917 ||||| | ||| ||| | | ||||||| ||| || || || || || || | Sbjct 34522 TTGAAAATTGAACGCACGGT---CGTCCACAAATTTCGGTAACGC-CACCGATGCGAGGT 34577 Query 80918 TGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAG 80977 | ||||||||||| || || | || |||| | | ||| |||||| ||| | Sbjct 34578 TACACACGGCCACTTCATCGGGCGACGTGTACTCAATCACTTCACAGCACAAGTTACTCG 34637 Query 80978 ACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACA 81037 | ||| || || || || | || || |||||| || ||||||||||| || Sbjct 34638 ATCGAATCGTGCCGAGATTCTGTTGATTCGACTTGCGATTCGCCGCGTCCTTGTACAGCA 34697 Query 81038 TGTACGGGGTACCGGTCTCGACCTG 81062 || |||| || ||||| | ||| Sbjct 34698 TGAACGGCACGCCCGTCTCAATCTG 34722 >seq2613 Length=31273 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| |||||||||||||| || |||||||| ||||| || ||||| | ||| Sbjct 12178 GGAATTCCTCCTGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGT 12237 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 | || || ||||| || | |||||||| || ||||| || | || | |||||||| Sbjct 12238 TCTCTCGCGGACTACAACATTCAAAAGGAGTCGACTCTACACTTGGTGCTTCGTCTTCGT 12297 Query 27628 GGTGG 27632 ||||| Sbjct 12298 GGTGG 12302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570119445820320